DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaC and Myo1c

DIOPT Version :10

Sequence 1:NP_523503.2 Gene:ninaC / 34012 FlyBaseID:FBgn0002938 Length:1501 Species:Drosophila melanogaster
Sequence 2:NP_001401097.1 Gene:Myo1c / 65261 RGDID:620443 Length:1063 Species:Rattus norvegicus


Alignment Length:1009 Identity:247/1009 - (24%)
Similarity:430/1009 - (42%) Gaps:145/1009 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 EDLAALENPVDE-NIIESLRHRILMGESYSFIGDILLSLNSNEIKQEFPQEFHAKYRFKSRSENQ 398
            :|...|||...| ..||:||.|......|::||.:|:|:|.....|.:.::...:||..|..|..
  Rat    49 QDFVLLENFTSEAAFIENLRRRFRENLIYTYIGPVLVSVNPYRDLQIYTRQHMERYRGVSFYEVP 113

  Fly   399 PHIFSVADIAYQDMLHHKEPQHIVLSGESYSGKSTNARLLIK---HLCYLGDGNRGATGRVESSI 460
            ||:|:|||..|:.:...:..|.:::||||.:||:...:.|::   ..|...:.......|:..|.
  Rat   114 PHLFAVADTVYRALRTERRDQAVMISGESGAGKTEATKRLLQFYAETCPAPERGGAVRDRLLQSN 178

  Fly   461 KAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMSGAVFNMYMLEKLRVATTDGTQHNFHIFYYF 525
            ..:....||.|..|::|:|......:.|...|...|.....|:|||.||...:..:.|||:||..
  Rat   179 PVLEAFGNAKTLRNDNSSRFGKYMDVQFDFKGAPVGGHILSYLLEKSRVVHQNHGERNFHVFYQL 243

  Fly   526 YDFINQQNQLKEYNLKAD-RNYRYLRVPPEVPPSKLKYRRDDPEGNVERYREFENILRDIDFNHK 589
            .:. .::..|:...|:.: ::|.||........|.:..:.|        ::.....|..|||...
  Rat   244 LEG-GEEEALRRLGLERNPQSYLYLVKGQCAKVSSINDKSD--------WKVVRKALSVIDFTED 299

  Fly   590 QLETVRKVLAAILNIGNIRF-RQNGKYAEVENTDIVSRIAELLRVDEKKFMWSLTNFIMVKGGIA 653
            ::|.:..::|::|::|||.| ......|:|...:.:..:..||.|:......:||:..::..|..
  Rat   300 EVEDLLSIVASVLHLGNIHFAADEDSNAQVTTENQLKYLTRLLGVEGTTLREALTHRKIIAKGEE 364

  Fly   654 ERRQYTTEEARDARDAVASTLYSRLVDFIINRINMNMSFPRA---VFGDTNAIIIHDMFGFECFN 715
            .......|:|..||||:|..:|||...:::.:||.:::...|   .:..|..:.:.|::|||.|.
  Rat   365 LLSPLNLEQAAYARDALAKAVYSRTFTWLVRKINRSLASKDAESPSWRSTTVLGLLDIYGFEVFQ 429

  Fly   716 RNGLEQLMINTLNEQMQYHYNQRIFISEMLEMEAEDIDTINLNFYDNKTALDNLLTKPDGLFYII 780
            .|..||..||..||::|..:.:....||..|.|||.|....:.:::||...|.:..|..|:..|:
  Rat   430 HNSFEQFCINYCNEKLQQLFIELTLKSEQEEYEAEGIAWEPVQYFNNKIICDLVEEKFKGIISIL 494

  Fly   781 D-DASRSCQDQDLI----MDRVSEKHSQFVKKHTAT----------EISVAHYTGRIIYDTRAFT 830
            | :..|..:..||.    ::...:.|..|:....|.          |..:.||.|.:.|....|.
  Rat   495 DEECLRPGEATDLTFLEKLEDTIKHHPHFLTHKLADQKTRKSLDRGEFRLLHYAGEVTYSVTGFL 559

  Fly   831 DINRDFVPPEMIETFRSSLDESIMLMFTNQLTKAGNLTMPFEAVQHKDESERKSYALNTLSAGCI 895
            |.|.|.:...:.||..||                   |.|..| |..|:||             :
  Rat   560 DKNNDLLFRNLKETMCSS-------------------TNPIMA-QCFDKSE-------------L 591

  Fly   896 SQVNNLRTLAANFRFTCLTLLKMLSQNANLGVHFVRCIRADLEYKPRSFHSDVVQQQMKALGVLD 960
            |......|:|..|:.:.|.|:::|......   ::|||:.:...:|..|...:::.|:|.||:::
  Rat   592 SDKKRPETVATQFKMSLLQLVEILRSKEPA---YIRCIKPNDAKQPGRFDEVLIRHQVKYLGLME 653

  Fly   961 TVIARQKGFSSRLPFDEFLRRYQFLAFDFDEPV--EMTKDNCRLLFLRL--KMEGWALGKTKVFL 1021
            .:..|:.||:.|..::.||:||:.|..: ..||  ...:|...:|...|  |.|.:.:|:||:|:
  Rat   654 NLRVRRAGFAYRRKYEAFLQRYKSLCPE-TWPVWTGRPQDGVAVLVRHLGYKPEEYKMGRTKIFI 717

  Fly  1022 RYYNDEFLARLYELQVKK---VIKVQSMMRALLARK---RVKGGKVF-------KLGKKGPEHHD 1073
            |:....| |....|:|::   ..|:|:..|....|:   |||...:.       .||::......
  Rat   718 RFPKTLF-ATEDSLEVRRQSLATKIQAAWRGFHWRQKFLRVKRSAICIQSWWRGTLGRRKAAKRK 781

  Fly  1074 VAASKIQKAFRG--------------FRDRVRLPPLVNEKSGQLNENTAD--------FIRPFAK 1116
            .||..|::..||              |.|.||...|:|.:. ||..|..|        .:|..::
  Rat   782 WAAQTIRRLIRGFILRHAPRCPENAFFLDHVRTSFLLNLRR-QLPRNVLDTSWPTPPPALREASE 845

  Fly  1117 KWREKSIFQVLLHYRAARFQDFVNLSQQVHIYNQRMVAGLNKCTRAVP----FERINMREVNS-- 1175
            ..||..:..::..|..:...::....||..:.::......:...::||    ..|:...|::.  
  Rat   846 LLRELCMKNMVWKYCRSISPEWKQQLQQKAVASEIFKGKKDNYPQSVPRLFISTRLGTEEISPRV 910

  Fly  1176 -SQLGPLP----VPIKK---------------MPFRLDQIPFYDTQYMVDPAN--SISRQAFPNQ 1218
             ..||..|    ||:.|               .|..:..:.....:..:|.||  .||..:..:.
  Rat   911 LQALGSEPIQYAVPVVKYDRKGYKPRSRQLLLTPSAVVIVEDAKVKQRIDYANLTGISVSSLSDS 975

  Fly  1219 LLTQHMEDD---EPWDSPLQRN---PSMTSCALT 1246
            |...|::.:   :..|..||.:   .::|..||:
  Rat   976 LFVLHVQREDSKQKGDVVLQSDHVIETLTKTALS 1009

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaCNP_523503.2 STKc_myosinIII_N_like 9..282 CDD:270785
MYSc_Myo21 346..1022 CDD:276848 184/703 (26%)
Myo1cNP_001401097.1 MYSc_Myo1 62..718 CDD:276829 183/701 (26%)
IQCG 751..781 CDD:467744 6/29 (21%)
Myosin_TH1 874..1055 CDD:461801 24/136 (18%)
Blue background indicates that the domain is not in the aligned region.

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