DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaC and si:ch211-18i17.2

DIOPT Version :9

Sequence 1:NP_523503.2 Gene:ninaC / 34012 FlyBaseID:FBgn0002938 Length:1501 Species:Drosophila melanogaster
Sequence 2:XP_700015.5 Gene:si:ch211-18i17.2 / 571341 ZFINID:ZDB-GENE-030131-5404 Length:761 Species:Danio rerio


Alignment Length:374 Identity:71/374 - (18%)
Similarity:111/374 - (29%) Gaps:152/374 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 HYDEEHQVSIEEEYRTLRDYCDH-----------PNLPEFYGVYKLSKPNGPDEIWFVMEYCAGG 101
            |......:|::.|..:...:...           |:..|..|:.      |..||...:.|...|
Zfish   350 HLKRVQSLSVDPEVESYASFIGQALEKTRGRECVPSWEEIQGLM------GRQEILCTVHYPGPG 408

  Fly   102 ------TAVDMVNKLLKLDRRMREEHIAYIIRETCRAAIELNRNHVLHRDIRGDNILLTKNGRVK 160
                  |:....|:::   |:|.|           |..::.:||                     
Zfish   409 CCQIPITSHTTANEVV---RKMAE-----------RLGLQDSRN--------------------- 438

  Fly   161 LCDFGLSRQVDSTLGKRGTCIGSPCWMAPEVVSAMESREPDITVRADVWALGITTIELADGKPPF 225
              .|||..|             :.||         |......|:.|||    ||..|....|.|.
Zfish   439 --TFGLFEQ-------------NACW---------EKAIGGSTIIADV----ITRFENLSAKDPD 475

  Fly   226 ADMHPTRAMFQIIRNPPPTLMRPTNWSQQINDFISESLEKNAENRPMMVEMVEHPFLTE------ 284
            :|.. .|..|::.     .|:...|.|                     .:.:|:.||.|      
Zfish   476 SDCQ-CRLCFKLY-----CLLDTENIS---------------------TDSIEYLFLYEQCHEMV 513

  Fly   285 ----LIENEDEMRSDIAEMLE-LSRDVKTLYKEPELFVDRGYVKRFDEKPEKMYPEDLA---ALE 341
                |...|:::.|..|..|: |..|...|...|.|              |:::|.::.   ||.
Zfish   514 VRGQLPACEEDLLSLAALRLQYLLGDFSALSPYPAL--------------EQLFPAEVVEARALL 564

  Fly   342 NPVDENIIESLRHRILMGESYSFIGDILLSLNSNEIKQEFPQEFHAKYR 390
            .|||.....|....:|.|           :|..::.:||..|...|:.|
Zfish   565 APVDPPGCPSFPGGLLAG-----------TLWGHKRRQEQDQRLRARLR 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaCNP_523503.2 STKc_myosinIII_N_like 9..282 CDD:270785 42/250 (17%)
S_TKc 16..282 CDD:214567 42/250 (17%)
MYSc 327..1034 CDD:214580 16/67 (24%)
MYSc_Myo21 346..1022 CDD:276848 9/45 (20%)
si:ch211-18i17.2XP_700015.5 PH-like 86..199 CDD:302622
PH 90..>177 CDD:278594
MyTH4 282..390 CDD:279165 5/39 (13%)
B41 400..646 CDD:214604 62/318 (19%)
UBQ 405..>445 CDD:294102 12/76 (16%)
FERM_M 494..646 CDD:278785 32/155 (21%)
PH-like 642..733 CDD:302622
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4229
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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