DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaC and Plekhh3

DIOPT Version :10

Sequence 1:NP_523503.2 Gene:ninaC / 34012 FlyBaseID:FBgn0002938 Length:1501 Species:Drosophila melanogaster
Sequence 2:XP_006247427.1 Gene:Plekhh3 / 360634 RGDID:1304854 Length:794 Species:Rattus norvegicus


Alignment Length:478 Identity:101/478 - (21%)
Similarity:168/478 - (35%) Gaps:147/478 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 LSKP--NGP--------DEIWFVMEYCAGGTAVDMVNKLLKLDRRMREEHIAYIIRETCRAAIEL 136
            |::|  |||        :|.|.::.                 |:.:.|:....|::..       
  Rat    61 LTQPTRNGPITDRLQSWEETWSLIP-----------------DKGLPEDDPDVIVKGW------- 101

  Fly   137 NRNHVLHRDIRGDNI---LLTKNGRVKLCDFGLSR-QVD--STLGKRGTCIGSPCWMAPEVVSAM 195
                 |:|:.||...   ||.:...     |.|:| .:|  |:.||....:||....:...|:..
  Rat   102 -----LYREPRGGGARPWLLPRRAW-----FVLTRDSLDQFSSSGKGARRLGSLVLTSLCSVTGP 156

  Fly   196 ESREPD-----ITV---------------RADVWALGITTIELADGKPPFADMHPTRAMFQII-- 238
            |.|..:     :||               .|:.|  |:...|:...|.|...  ||:.:.:.|  
  Rat   157 ERRPKETGLWSVTVSGRKHSIRLCSPRQAEAERW--GVALREVIASKAPLET--PTQLLLRDIQE 217

  Fly   239 -------------RNPPPTLMRPTNWSQQINDFISESLEKNAEN---RPMMVEMVEHPFLTELIE 287
                         |||   ::|.|: |......:....|.:|..   .|:..|.|......:.:|
  Rat   218 SGGDPEAVALIYRRNP---ILRHTS-SALYAPLLPLPYEVSAPGPGYAPLREEAVRLFLALQALE 278

  Fly   288 NEDEMRSDIAEMLELSRDVKTLYKEPELFVDRGYVKRFDEKPEKMYPEDLAALENPVDENIIESL 352
            ........:..:|:..||:..|  :.|||:.   :.:....|..  |..|.|.::|.      :|
  Rat   279 GARRPGPLMQGVLQTCRDLPAL--QDELFLQ---LAKQTSGPAG--PPGLPATQDPA------AL 330

  Fly   353 RH-RILMGESYSF------IGDILLSLNSNEIKQEFPQEFHAKY-RF----KSRSENQPHIFSVA 405
            |: ::|...|.:|      .|.:|..|...|  |..|....|:| ||    ..|:..:..:.|:|
  Rat   331 RYWQLLTCMSCTFRPGGAVRGHLLGHLERTE--QALPDSELAEYARFIRKALGRTRGRELVPSLA 393

  Fly   406 DIA----YQDML---HHKEPQHIVLSGESYSGKSTNARLLIKHLCYLGDGN-------RGATGRV 456
            :|:    .|::|   |........:|.:|::.....||.|:..|......|       |||..|.
  Rat   394 EISALSRRQELLCTVHCPGAGACPVSIDSHTTAGEVARELVGRLGLARSRNAFALYEQRGAQERA 458

  Fly   457 ESSIKAILMLVNAGTPVNNDSTR 479
                      :..||.|.:..||
  Rat   459 ----------LAGGTLVADVLTR 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaCNP_523503.2 STKc_myosinIII_N_like 9..282 CDD:270785 50/253 (20%)
MYSc_Myo21 346..1022 CDD:276848 38/160 (24%)
Plekhh3XP_006247427.1 PH3_MyoX-like 84..208 CDD:270109 29/161 (18%)
MyTH4 288..397 CDD:459939 31/123 (25%)
Ubl1_cv_Nsp3_N-like 401..500 CDD:475130 19/81 (23%)
FERM_M 514..>552 CDD:459788
PH-like 661..748 CDD:473070
Blue background indicates that the domain is not in the aligned region.

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