DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaC and Myo10

DIOPT Version :9

Sequence 1:NP_523503.2 Gene:ninaC / 34012 FlyBaseID:FBgn0002938 Length:1501 Species:Drosophila melanogaster
Sequence 2:XP_008758990.2 Gene:Myo10 / 310178 RGDID:1307193 Length:2060 Species:Rattus norvegicus


Alignment Length:1271 Identity:316/1271 - (24%)
Similarity:531/1271 - (41%) Gaps:246/1271 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   326 DEKPEKMYP------EDLAALENPVDENIIESLRHRILMGESYSFIGDILLSLNSNE-IKQEFPQ 383
            ::|...|:|      :|:|:|......:|:.:|..|....:.|::||.|:.|:|..: |...:.:
  Rat    51 NQKVTAMHPLHEEGVDDMASLTELHGGSIMYNLFQRYKRNQIYTYIGSIIASVNPYQPIAGLYER 115

  Fly   384 EFHAKYRFKSRSENQPHIFSVADIAYQDMLHHKEPQHIVLSGESYSGKSTNARLLIKHLCYLGDG 448
            ....:|......|..||||::|:..|:.:....:.|.:::||||.:||:.:.:|::|.|..:...
  Rat   116 ATMEQYSRCHLGELPPHIFAIANECYRCLWKRHDNQCVLISGESGAGKTESTKLILKFLSVISQH 180

  Fly   449 NRGATGRVESSI--KAILM-------LVNAGTPVNNDSTRCVLQYCLTFGK--------TGKMSG 496
            :.....:.:||.  :|||.       ..||.|..||:|:|        |||        .|.:.|
  Rat   181 SLDLCLQEKSSSVEQAILQSSPIMEAFGNAKTVYNNNSSR--------FGKFVQLNICQKGNIQG 237

  Fly   497 AVFNMYMLEKLRVATTDGTQHNFHIFYYFYDFINQQNQLKEYNLKADRNYRYLRVPPEVPPSKLK 561
            .....|:|||.||...:..:.|:||||.....:: |.:.:|:.|....||.||        ::..
  Rat   238 GRIVDYLLEKNRVVRQNPGERNYHIFYALLAGLD-QGEREEFYLSLPENYHYL--------NQSG 293

  Fly   562 YRRDDPEGNVERYREFENILRDIDFNHKQLETVRKVLAAILNIGNIRFRQNGKYAEVENTDIVSR 626
            ...|....:.|.:|:....:..:.|:.:::..|.::||.||::|||.|...|. |::.....:.|
  Rat   294 CTEDKTISDQESFRQVIEAMEVMQFSKEEVREVLRLLAGILHLGNIEFITAGG-AQISFKTALGR 357

  Fly   627 IAELLRVDEKKFMWSLTNFIMVKGGIAERRQYTTEEARDARDAVASTLYSRLVDFIINRINMNMS 691
            .||||.:|..:...:||...|...|.......:.::|.|:||::|..||:|..:::|.:||..:.
  Rat   358 SAELLGLDPTQLTDALTQRSMFLRGEEILTPLSVQQAVDSRDSLAMALYARCFEWVIKKINSRIK 422

  Fly   692 FPRAVFGDTNAIIIHDMFGFECFNRNGLEQLMINTLNEQMQYHYNQRIFISEMLEMEAEDIDTIN 756
            ..    .|..:|.|.|:||||.|..|..||..||..||::|.::|:.||..|.||...|.:...:
  Rat   423 GK----DDFKSIGILDIFGFENFEVNHFEQFNINYANEKLQEYFNKHIFSLEQLEYSREGLVWED 483

  Fly   757 LNFYDNKTALDNLLTKPDGLFYIIDDASRSCQDQD-LIMDRVSEKHSQ---FVKKHTA-TEISVA 816
            :::.||...|| |:.|..||..:|::.|...|..| .:::::..:|:.   :||...| ....|.
  Rat   484 IDWIDNGECLD-LIEKKLGLLALINEESHFPQATDSTLLEKLHNQHANNHFYVKPRVAVNNFGVK 547

  Fly   817 HYTGRIIYDTRAFTDINRDFVPPEMIETFRSSLDESIMLMFTNQLTKAGNLTMPFEAVQHKDESE 881
            ||.|.:.||.|...:.|||        |||   |:.:.|:..::.....:|   ||.:..::..:
  Rat   548 HYAGEVQYDVRGILEKNRD--------TFR---DDLLNLLRESRFDFIYDL---FEHISSRNNQD 598

  Fly   882 RKSYALNTLSAGCISQVNNLRTLAANFRFTCLTLLKMLSQNANLGVHFVRCIRADLEYKPRSFHS 946
                   ||..|   ..:...|:::.|:.:..:|:..||.:   ...|||||:.:.:..|..|..
  Rat   599 -------TLKCG---SKHRRPTVSSQFKDSLHSLMATLSSS---NPFFVRCIKPNTQKMPDQFDQ 650

  Fly   947 DVVQQQMKALGVLDTVIARQKGFSSRLPFDEFLRRYQFLAFDFDEPVEMTKDNCRLL--FLRLKM 1009
            .||..|::..|:|:||..|:.|::.|.||.:|.:||:.|..|...| |..:..|.:|  |.....
  Rat   651 AVVLNQLRYSGMLETVRIRKAGYAVRRPFQDFYKRYKVLMRDLALP-EDIRGKCTVLLQFYDASN 714

  Fly  1010 EGWALGKTKVFLRYYNDEFLARLYELQVKK------------------------VIKVQSMMRAL 1050
            ..|.|||||||||...::.|.:..|.::.:                        |:.:|...||.
  Rat   715 SEWQLGKTKVFLRESLEQKLEKRREEEIDRAAMVIRAHILGYLARKQYRKVLCGVVTIQKNYRAF 779

  Fly  1051 LARKRVKGGKVFKLGKKGPEHHDVAASKIQKAFRGFRDRVRLPPLVNEKSGQLNENTADFIRPFA 1115
            |||||..             |...||...||..||...|.....|:.||. :|.|..    |...
  Rat   780 LARKRFL-------------HLKKAAIVFQKQLRGRLARKVYRQLLAEKR-ELEERK----RLEE 826

  Fly  1116 KKWREKSIFQVLLHYRAARFQDFVNLSQQVHIYNQRMVAGLNKCTRAVPFERINMREVNSSQLGP 1180
            :|.||:...:   ..||.|..|.:...|:.....|:.:..|.|..|.....|...::..:.|:..
  Rat   827 EKKREEEERE---RKRAQREADLLRAQQEAETRKQQELEALQKNQREADLTRELEKQRENKQVEE 888

  Fly  1181 LPVPIKKMPFRLDQIPFYDTQYMVDPANSISRQAFPNQLLTQHMEDDEPWDSPLQRNPSMTSCAL 1245
            :        .||:: ...|.|.|.:.......:|...:|  |.:.|:|     |:|         
  Rat   889 I--------LRLEK-EIEDLQRMKEQQELSLTEASLQKL--QQLRDEE-----LRR--------- 928

  Fly  1246 TYNAYKKEQACQT--------NWDRM-----------------------------GESDNI-YNQ 1272
                 .:::||:.        |:|.:                             ||..|. ::|
  Rat   929 -----LEDEACRAAQEFLESLNFDEIDECVRNIERSLSVGSEISGELSELAENASGEKPNFNFSQ 988

  Fly  1273 GYFRDPQQLRRNQMQMNMNAYNNAYNSYNSNYNNQNW-GVHRS--GSRRNSLKGYAAPPPPPPPM 1334
            .|   |::......:.:.:|:.::.|.....:::|.. |:..|  .|..:....|...|..|.  
  Rat   989 PY---PEEEVDEGFEADDDAFKDSPNPSEHGHSDQRTSGIRTSDDSSEEDPYMNYTVVPTSPS-- 1048

  Fly  1335 PSSNYYRNNPNQQQRNYQQRSSYPPSDPVRELQNMARNEGD-NSEDPPFNFKAMLRKTNYPRGSE 1398
                  .::......:.|..:|...|........|.:|.|| .|.|..:::.    :.:|..|:.
  Rat  1049 ------ADSTVLLAASVQDSASLHNSSSGESTYCMPQNNGDLPSPDGDYDYD----QDDYEDGAI 1103

  Fly  1399 TNTYDFNNRRGSDSGDQHTFQPPKLRSTGRRYQDDEGYNSSSGNYGVSRKFGQQQRAPTLRQSPA 1463
            |            ||...||.    .|.|.::..|  |..|.|.|..|..:         |.|..
  Rat  1104 T------------SGSSVTFS----NSYGSQWSPD--YRYSVGTYNSSGAY---------RFSSE 1141

  Fly  1464 SVGRSFEDS----NAR-SFEEAGSYVEEEIAPGITL 1494
            ....|||||    ::| ..::..||..:.:...:||
  Rat  1142 GAQSSFEDSEEDFDSRFDTDDELSYRRDSVYSCVTL 1177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaCNP_523503.2 STKc_myosinIII_N_like 9..282 CDD:270785
S_TKc 16..282 CDD:214567
MYSc 327..1034 CDD:214580 211/737 (29%)
MYSc_Myo21 346..1022 CDD:276848 202/700 (29%)
Myo10XP_008758990.2 MYSc 58..739 CDD:214580 209/731 (29%)
MYSc_Myo10 77..727 CDD:276840 202/700 (29%)
IQ 741..763 CDD:197470 0/21 (0%)
SPEC <843..957 CDD:295325 24/143 (17%)
MYO10_CC 882..932 CDD:293340 13/79 (16%)
PH-like 1183..>1225 CDD:302622
PH2_MyoX 1217..1318 CDD:270108
PH 1217..1312 CDD:278594
PH3_MyoX-like 1383..1508 CDD:270109
PH 1398..1497 CDD:278594
MyTH4 1551..1697 CDD:214535
UBQ 1703..>1748 CDD:294102
B41 1706..1960 CDD:214604
FERM_M 1801..1960 CDD:278785
FERM_C_MyoX 1956..2044 CDD:270023
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4229
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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