DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaC and Myo1a

DIOPT Version :10

Sequence 1:NP_523503.2 Gene:ninaC / 34012 FlyBaseID:FBgn0002938 Length:1501 Species:Drosophila melanogaster
Sequence 2:NP_062197.1 Gene:Myo1a / 299509 RGDID:3135 Length:1043 Species:Rattus norvegicus


Alignment Length:980 Identity:234/980 - (23%)
Similarity:405/980 - (41%) Gaps:235/980 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 EDLAALENPVDENIIESLRHRILMGESYSFIGDILLSLNSNEIKQEFPQEFHAKYRFKSRSENQP 399
            |||..||...:|::|::|:.|....|.|::||::::|:|..:....:..||.||||..:..|.:|
  Rat    11 EDLILLEPLDEESLIKNLQLRYEKKEIYTYIGNVVISMNPYQQLPIYGPEFIAKYRDYTFYELKP 75

  Fly   400 HIFSVADIAYQDMLHHKEPQHIVLSGESYSGKSTNARLLIKH---LCYLGDGNRGATGRVESSIK 461
            ||:::|::|||.:......|.|:::|||.:||:..::|::.:   :|..|:.......::..|..
  Rat    76 HIYALANVAYQSLKDRDRDQCILITGESGAGKTEASKLVMSYVAAVCGKGEQVNSVKEQLLQSNP 140

  Fly   462 AILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMSGAVFNMYMLEKLRVATTDGTQHNFHIFYYFY 526
            .:....||.|..|::|:|......:.|...|...|.|...|:|||.||......:.||||||...
  Rat   141 VLEAFGNAKTIRNDNSSRFGKYMDIEFDFKGSPLGGVITNYLLEKSRVVKQLKGERNFHIFYQLL 205

  Fly   527 DFINQQNQLKEYNLKAD-RNYRYLRVPPEVPPSKLKYRRDDPEGNVER---------YREFENIL 581
            ...:.| .||...|:.| |.|.||                  .|.|.|         :|..:|.:
  Rat   206 AGADTQ-LLKALKLEEDARGYAYL------------------NGEVSRVNGMDDASNFRAVQNAM 251

  Fly   582 RDIDFNHKQLETVRKVLAAILNIGNIR----FRQNGKYAE-VENTDIVSRIAELLRVDEKKFMWS 641
            ..|.|:.:::..|.:|.|.:|.:||::    |:.||..|. |.:...:..|.|::.::..:...:
  Rat   252 AVIGFSEEEIRQVLEVTALVLKLGNVKLADEFQANGLPASGVCDGKGIQEIGEMMGLNSAELEKA 316

  Fly   642 LTNFIMVKGGIAERRQYTTEEARDARDAVASTLYSRLVDFIINRINMNMSF----PRAVFGDTNA 702
            |.:..|..|...........:|:.||||:|..:||||.|:|:||||.::..    .|.|.|    
  Rat   317 LCSRTMETGKEKVVTVLNVIQAQYARDALAKNIYSRLFDWIVNRINESIKVGTGEKRKVMG---- 377

  Fly   703 IIIHDMFGFECFNRNGLEQLMINTLNEQMQYHYNQRIFISEMLEMEAEDIDTINLNFYDNKTALD 767
              :.|::|||....|..||.:||..||::|..:.:.....|..|.:.|.|....:.::||....|
  Rat   378 --VLDIYGFEILEDNSFEQFVINYCNEKLQQVFIELTLKEEQEEYKREGIPWTKVEYFDNGIICD 440

  Fly   768 NLLTKPDGLFYIIDDASRSCQDQDLIMD--------RVSEKHSQFVKKHTATE------------ 812
            .:.....|:..::|:   .|....::.|        ::..|||.:..|.|...            
  Rat   441 LIEHSQRGILAMLDE---ECLRPGVVSDTTFLAKLNQLFSKHSHYESKVTQNAQRQYDRTMGLSC 502

  Fly   813 ISVAHYTGRIIYDTRAFTDINRDFVPPEMIETFRSSLDESIMLMFTNQLTKAGNLTMPFEAVQHK 877
            ..:.||.|::.|:..:|.|.|.|.:..::.:|...:....:..:|.....|..:|..|       
  Rat   503 FRICHYAGKVTYNVTSFIDKNNDLLFRDLSQTMWKAQHPLLHSLFPEGNPKEASLKRP------- 560

  Fly   878 DESERKSYALNTLSAGCISQVNNLRTLAANFRFTCLTLLKML-SQNANLGVHFVRCIRADLEYKP 941
                                    .|....|:.:...|:|.| |:|.|    ::|||:.:.:.:.
  Rat   561 ------------------------PTAGTQFKNSVAILMKNLYSKNPN----YIRCIKPNDQQQQ 597

  Fly   942 RSFHSDVVQQQMKALGVLDTVIARQKGFSSRLPFDEFLRRYQFLA--------FDFDEPVEMTKD 998
            ..|.|::|..|.:.||:|:.|..|:.|::.|..:..||.||:.|:        .:..|.||..  
  Rat   598 GRFTSELVMVQARYLGLLENVRVRRAGYAFRQAYKPFLERYRLLSRSTWPRWNGEDREGVEKV-- 660

  Fly   999 NCRLLFLRLKMEGWALGKTKVFLRYYNDEFLARLYELQVKKVIKVQSMMRALLARKRVKGGKVFK 1063
               |..|.|..|..|.|:||:|:|...     .|:.|:.::.:::|.:                 
  Rat   661 ---LGSLILSSEELAYGRTKIFIRSPK-----TLFYLEEQRRLRLQQL----------------- 700

  Fly  1064 LGKKGPEHHDVAASKIQKAFRGFRDRVRLPPLVNEKS-----------------GQLNENTADFI 1111
                        |:.|||.:||:|.|.....:  .||                 |::..:.. .|
  Rat   701 ------------ATLIQKVYRGWRCRTHYQQM--RKSQILISAWFRGNKQKKHYGKIRSSVL-LI 750

  Fly  1112 RPFAKKWREKS-----------------IFQ-----VLLHYR--------------AARFQDFVN 1140
            :.|.:.|:.:.                 |:|     .||:.:              ||.::.|..
  Rat   751 QAFVRGWKARKNYRKYFRSGAAITLANFIYQSITQKFLLNLKKNLPSTKVLDNTWPAAPYRCFNT 815

  Fly  1141 LSQQV-HIYNQRMVAGLNKCTR----AVPFERINMRE----------VNSSQLGPLPVPIKKMPF 1190
            .:|:: |::.|.      ||.:    ..|.:...:||          ..:|.|..:||     ||
  Rat   816 ANQELQHLFYQW------KCKKYRDQLSPKQVQTLREKLCASELFKGKKASYLQSVPV-----PF 869

  Fly  1191 RLDQI 1195
            |.|.:
  Rat   870 RGDYV 874

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaCNP_523503.2 STKc_myosinIII_N_like 9..282 CDD:270785
MYSc_Myo21 346..1022 CDD:276848 188/726 (26%)
Myo1aNP_062197.1 MYSc_Myo1 22..681 CDD:276829 188/726 (26%)
IQ 742..764 CDD:197470 3/22 (14%)
Myosin_TH1 847..1042 CDD:461801 8/33 (24%)
Blue background indicates that the domain is not in the aligned region.

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