DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaC and Myo5c

DIOPT Version :10

Sequence 1:NP_523503.2 Gene:ninaC / 34012 FlyBaseID:FBgn0002938 Length:1501 Species:Drosophila melanogaster
Sequence 2:XP_006510998.1 Gene:Myo5c / 208943 MGIID:2442485 Length:1749 Species:Mus musculus


Alignment Length:939 Identity:237/939 - (25%)
Similarity:404/939 - (43%) Gaps:167/939 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   305 DVKTLYKEPELFVDRGYVKRFDEKPEKMYPEDLAALENPVDENIIESLRH-RILMGES------- 361
            |.:.::|..|:..|    .|..::..::..||...||.|||...:..||: .||:||:       
Mouse    17 DPEEVWKSAEIAKD----YRAGDRVLRLLLEDGMELEYPVDPGSLPPLRNPDILVGENDLTALSY 77

  Fly   362 --------------------YSFIGDILLSLNSNEIKQEFPQEFHAKYRFKSRSENQPHIFSVAD 406
                                |::.|.||:::|..:....:.......|..::..:..||||:||:
Mouse    78 LHEPAVLHNLRIRFAESKLIYTYSGIILVAMNPYKQLPIYGDAIIHAYSGQNMGDMDPHIFAVAE 142

  Fly   407 IAYQDMLHHKEPQHIVLSGESYSGKSTNARLLIKHLCYLGDGNRGATGRVESSIKAILMLV---- 467
            .||:.|..:...|.|::||||.:||:.:||..:::...:...:..|  .||..:.|...:.    
Mouse   143 EAYKQMARNNRNQSIIVSGESGAGKTVSARYAMRYFATVSKSSSNA--HVEDKVLASNPITEAVG 205

  Fly   468 NAGTPVNNDSTRCVLQYCLTFGKTGKMSGAVFNMYMLEKLRVATTDGTQHNFHIFYYFYDFINQQ 532
            ||.|..|::|:|......::|.:..::.||....|:|||.||......:.|:||||...... ||
Mouse   206 NAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTYLLEKSRVVFQSENERNYHIFYQLCASA-QQ 269

  Fly   533 NQLKEYNLKADRNYRYLRVPPEVPPSKLKYRRDDPEGNVERYREFENILRDIDFNHKQLETVRKV 597
            ::.|...|.:...:.|.|:........:..|.|    .||..:.|..:....||   |:: |.|:
Mouse   270 SEFKHLKLGSAEEFNYTRMGGNTVIEGVNDRAD----MVETQKTFTLLGFKKDF---QMD-VFKI 326

  Fly   598 LAAILNIGNIRFRQ--NGKYAEVENTDIVSRIAELLRVDEKKFMWSLTNFIMVKGGIAERRQYTT 660
            |||||::||::...  |.:.:..|:...:....|||.::..|....|.|..:|.......:..|.
Mouse   327 LAAILHLGNVQVTTVGNERSSVSEDDSHLKVFCELLGLETSKVAQWLCNRKIVTSSETVVKPMTR 391

  Fly   661 EEARDARDAVASTLYSRLVDFIINRINMNMSFPRAVFGDTNAII-IHDMFGFECFNRNGLEQLMI 724
            .:|.:||||:|..:|:.|.|||:.:||..:.|.    |..:..| :.|::|||.|:.|..||..|
Mouse   392 PQAINARDALAKKIYAHLFDFIVEQINQALHFS----GKQHTFIGVLDIYGFETFDVNSFEQFCI 452

  Fly   725 NTLNEQMQYHYNQRIFISEMLEMEAEDIDTINLNFYDNKTALDNLLTKPDGLFYIIDDASRSC-- 787
            |..||::|..:|..:|..|..|...|||....::||||:..:| |:....|:..::|:   .|  
Mouse   453 NYANEKLQQQFNLHVFKLEQEEYMKEDIPWTLIDFYDNQPVID-LIEAKMGILELLDE---ECLL 513

  Fly   788 ---QDQDLIMDRVSEKHSQFVKKHTATE--------ISVAHYTGRIIYDTRAFTDINRDFVPPEM 841
               .|::.:    .:.::.||.|::..|        ..:.|:..::.|....|.:.|||.|...:
Mouse   514 PHGTDENWL----QKLYNNFVNKNSLFEKPRMSNSSFIIQHFADKVEYQCEGFLEKNRDTVYDML 574

  Fly   842 IETFRSSLDESIMLMFTNQLTKAGNLTMPFEAVQHKDESERKSYALNTLSAGCISQVN--NLRTL 904
            :|..|:|........|......:.    ||.|:            :...||..:.:.|  :.||.
Mouse   575 VEILRASKFHLCAAFFQESPVPSS----PFGAM------------ITVKSAKQVIKPNTKHFRTT 623

  Fly   905 AAN-FRFTCLTLLKMLSQNANLGVHFVRCIRADLEYKPRSFHSDVVQQQMKALGVLDTVIARQKG 968
            ..| ||.:...|::.|:...   .|:||||:.:.|..|..|.|..:.||::|.|||:|:....:.
Mouse   624 VGNKFRSSLYLLMETLNATT---PHYVRCIKPNDEKMPFEFDSKRIVQQLRACGVLETIRISAQS 685

  Fly   969 FSSRLPFDEFLRRYQFLAFDFDEPVEMTKDNCRLLFLRLKMEG--WALGKTKVFLRYYNDEFLAR 1031
            :.||..:.||..||..|....:..:...|:.|:::..||..:.  :..|:||:|.|.....:|.:
Mouse   686 YPSRWTYLEFYSRYGILMTQQELSLSDKKEVCKVVLHRLIQDSNQYQFGRTKIFFRAGQVAYLEK 750

  Fly  1032 L------------------------------YELQVKKVIKVQSMMR-------------ALLAR 1053
            |                              ..|.:::..:.|..:|             |::.:
Mouse   751 LRLDKLRQDCIMIQKHVRGWLQRRKFLRERQAALTIQRYFRGQQTVRKAITATALKEAWAAIILQ 815

  Fly  1054 KRVKG---GKVFKLGKKGPEHHDVAASKIQKAFRGFRDRVRLPPLVNEKSGQLNENTADFIRPFA 1115
            |..:|   ..:::|.:       ||...||...|||..|.|...|       |.|:.|..::.:|
Mouse   816 KYCRGYLVRNLYQLIR-------VATITIQAHTRGFLARRRYRKL-------LQEHKAVILQKYA 866

  Fly  1116 KKWREKSIFQ--------VLLHYRAARFQ 1136
            :.|..:..||        :.|.||..|.|
Mouse   867 RAWLARRRFQNIRRFVLNIQLTYRVQRLQ 895

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaCNP_523503.2 STKc_myosinIII_N_like 9..282 CDD:270785
MYSc_Myo21 346..1022 CDD:276848 193/728 (27%)
Myo5cXP_006510998.1 MYSc_Myo5 81..741 CDD:276831 187/701 (27%)
IQ 831..851 CDD:459869 9/26 (35%)
SMC_prok_B <850..>1385 CDD:274008 13/53 (25%)
Myo5c_CBD 1376..1743 CDD:271260
Blue background indicates that the domain is not in the aligned region.

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