DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaC and hum-4

DIOPT Version :9

Sequence 1:NP_523503.2 Gene:ninaC / 34012 FlyBaseID:FBgn0002938 Length:1501 Species:Drosophila melanogaster
Sequence 2:NP_001359540.1 Gene:hum-4 / 181335 WormBaseID:WBGene00002037 Length:2577 Species:Caenorhabditis elegans


Alignment Length:1297 Identity:278/1297 - (21%)
Similarity:490/1297 - (37%) Gaps:302/1297 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 EDLAALENPVDENIIESLRHRILMGESYSFIGDILLSLNSNEIKQEFPQEFHAKYRFKSRSENQP 399
            ::|..|.:..:..|.::|..|...|.:|:...::|:.:|....|.   .|....:...|.|    
 Worm     2 DNLIELPDQSEAGIAQNLHERFKKGVTYTKASNVLVFVNDFNDKD---SEDQLSWETSSTS---- 59

  Fly   400 HIFSVADIAYQDMLH-HKEPQHIVLSGESYSGKSTNARLLIKHLCYLGDGNRGATGRVESSIKAI 463
            .:.:||..|...:.: ....:.||..|||.||||.|.....|:|  ........:.:..|||:.:
 Worm    60 GVNAVAKNALNKIFNMSSNAESIVFGGESGSGKSYNVFKAFKYL--TSQPKSKVSTKHSSSIEFV 122

  Fly   464 LMLVN-AGTPVNNDSTRCVLQYCLTFGKTGKMSGAVFNMYM-LEKLRVATTDGTQHNFHIFYYFY 526
            ..... |.|..|:::||......|.: |...::|......: ||..||.:....:.||:|||..|
 Worm   123 FKSFGCAKTLKNDEATRFGCSIDLLY-KRNVLTGLNLKYTVPLEVPRVISQKPGERNFNIFYEVY 186

  Fly   527 DFINQQNQLKEYNLKADRNYRYLRVPPEVPPSKLKYRRDDPEGN--------VERYREFENILRD 583
            ..::.:.:.| :.:|..:.:.|:.                 :||        |.|::..|:.|..
 Worm   187 HGLSDEMKAK-FGIKGLQKFFYIN-----------------QGNSSENIQHDVNRFKHLESALHV 233

  Fly   584 IDFNHKQLETVRKVLAAILNIGNIRFRQNGK------YAEVENTDIVSRIAELLRVDEKKFMWSL 642
            :.|:.....::.|:::.||:||||.||....      ..|:.|...:..||.||.||..:    |
 Worm   234 LGFSDDHCMSIYKIISTILHIGNIYFRTKRNPNVEQDVVEIGNLAELKWIAFLLEVDFDQ----L 294

  Fly   643 TNFIMVKGGIAERRQYTTEE--------ARDARDAVASTLYSRLVDFIINRINMNMSFPRAVFGD 699
            ..|::.          |:|:        |.|.||:.|..:|..|..:::|||.:.:....    .
 Worm   295 VKFLLP----------TSEDGSTIELNAALDNRDSFAMMIYEELFKWVLNRIGLQLKCSL----H 345

  Fly   700 TNAIIIHDMFGFECFNRNGLEQLMINTLNEQMQYHYNQRIFISEMLEMEAED---IDTINLNFYD 761
            |..|.|.|.:|||.:|.||:|:.:||::||:::..:.:..|..::::. |:|   :|....|..:
 Worm   346 TGVISILDHYGFEKYNNNGVEEFLINSVNERIENLFVKHCFHDQLIDY-AKDGISVDYKVPNSIE 409

  Fly   762 NKTALDNLLTKPDGLFYIIDDASRSCQ----DQDLIMDRVSEKHSQ-----FVKKHTATEISVAH 817
            |...::.|..||.||..::.|   .|:    ..:..::..:..|:.     ..:.....|..|.|
 Worm   410 NGKTVELLFKKPYGLLSLLTD---ECKFPKGTHETYLEHCNLNHTDRSAYGKARNKERLEFGVRH 471

  Fly   818 YTGRIIYDTRAFTDINRDFVPPEMIETFRSSLDESIMLMFTNQLTKAGNLTMPFEAVQHKDESER 882
            ..|...|:...|...|:..:....::..|:|.:..|.|:|                         
 Worm   472 CIGTTWYNVTDFFARNKRIISLSAVQLMRNSKNPIIGLLF------------------------- 511

  Fly   883 KSYALNTLSAGCISQVNNLRTLAANFRFTCLTLLKMLSQNANLG-VHFVRCIRADLEYKPRSFHS 946
            :||..|| |...:||        |.|   .|...:.::...|:. |||||||:::.|.:...|..
 Worm   512 ESYGGNT-SDIIVSQ--------AQF---VLRGAQDIADKINVSHVHFVRCIKSNNERQSTKFDI 564

  Fly   947 DVVQQQMKALGVLDTVIARQKGFSSRLPFDEFLRRYQFLAFDFDEPVEMTKDNCRLLFLRLKMEG 1011
            .:|.:|:|.|.:.:.:..|.||:..::....|.|:|:.|   ....:...::...::...|:.:|
 Worm   565 PLVNRQIKNLLLAELLSFRVKGYPVKISKTTFARQYRCL---LPGDIAQCQNEKEIIQDILQGQG 626

  Fly  1012 ------WALGKTKVFLRYYNDEFLARLYE-LQVK----KVIKVQSMMRALLARKRVK--GGKVFK 1063
                  :.:|...||||    |.||..|: ||.|    ..|.:|..|::.:|:|..|  ...:.|
 Worm   627 VKYEDDFKIGTEYVFLR----ERLAERYDGLQNKICGDAAIIIQKNMKSFVAQKVYKRMRAAIIK 687

  Fly  1064 L-----GKKGPEHHDVAASKIQKAF-RGFRDRVRL----PPLVNEKSGQLNENTADF--IRPFAK 1116
            |     |.|....:.:...::.||. |..:...||    ..|..|.||||.:....:  |...||
 Worm   688 LQSGLRGWKARRDYIIKREEMFKAIGRTMKRNKRLDAYHQALGTENSGQLQQTLVGYIDINEDAK 752

  Fly  1117 KWREK-----SIFQVLLHYRAARFQDFVNLSQQVHIYNQRMVAGLNKCTRAVPFERINMREVNSS 1176
            |:.|:     ...:.|.||.....::|              ::.:|..|    .|:.........
 Worm   753 KFLERPTSDSDATETLTHYLTVPMKNF--------------LSNMNSIT----LEQFAEENFKGH 799

  Fly  1177 QLGPLPVPIKKMPFRLDQIPFYDTQYMVDPANSISRQAFPNQLLTQHMED------DEPWDSPLQ 1235
            .|.|...|| ..|| |.:...||.:..|:....|.:.....:|..:..||      .:...:|.|
 Worm   800 LLEPRREPI-MTPF-LHKESDYDFRLSVEIFKLILKYMNDIKLTKKQREDLGRYIVQQGISNPCQ 862

  Fly  1236 RNPSMTSCALTYNAYKKEQACQTNWDRMGESDNIYNQ---------GYFRDPQQLRRNQ----MQ 1287
            |:..:.......|..:.:.|....|..:..:.:::..         |:|.......:.|    :|
 Worm   863 RDEILVQTINQINKNQDKTASDNGWKLVHMAISVFPPTENIIPMLIGFFNKESVPMKEQLFATLQ 927

  Fly  1288 MNMNAYN---------------------------NAYNSYNSNYNNQNWGVHRSGSRRNSLK--- 1322
            ..:..|:                           |.|:....:.:...|......:.| .||   
 Worm   928 RRLKIYDSEIARELPPSNLELIATPNIPNTVAEINCYDGLCCDVHLSPWSTTSEIAER-ILKQRG 991

  Fly  1323 -----GYAAPPPPPPPM--PSSNYYRNN-------PNQQQRNYQQ-RSSYPPSDPVRELQNMARN 1372
                 |:......|..:  |:.|::.::       .|....|.|. ..::||...|::       
 Worm   992 VGIALGWTVEVETPNRVFAPTGNHFIHDVFSQIEGANMDSENQQNIFFNFPPEKLVKK------- 1049

  Fly  1373 EGDNSEDPPFNFKAMLRK-------TNYPRGSETNTYDFNNRRGSDSGDQHTFQPP---KLRSTG 1427
                   ||...|.::::       ||........||        .:.::...|||   :.|:|.
 Worm  1050 -------PPVVPKEVVQEQEIVSQNTNGTIPKAARTY--------PTPEEWINQPPQRTESRNTP 1099

  Fly  1428 RRYQ--DDEG-------YNSSSG-NYGVSRKFGQQQRAPTLRQSPASVGRSFEDSNARSFEE 1479
            |.:|  |:|.       ||..:| .|.:.||           ..||.  ::.||:.....||
 Worm  1100 RDHQKPDEESDESLVREYNEEAGYAYTLPRK-----------NKPAP--QAVEDNETSESEE 1148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaCNP_523503.2 STKc_myosinIII_N_like 9..282 CDD:270785
S_TKc 16..282 CDD:214567
MYSc 327..1034 CDD:214580 172/742 (23%)
MYSc_Myo21 346..1022 CDD:276848 165/719 (23%)
hum-4NP_001359540.1 MYSc_Myo12 13..643 CDD:276841 165/719 (23%)
IQ 680..701 CDD:197470 4/20 (20%)
MyTH4 803..952 CDD:214535 24/150 (16%)
PRK10263 <1162..>1357 CDD:236669
SH3 1974..2030 CDD:388381
MyTH4 2100..2255 CDD:214535
B41 2262..2475 CDD:214604
PH-like 2489..2563 CDD:388408
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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