DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ninaC and hum-6

DIOPT Version :10

Sequence 1:NP_523503.2 Gene:ninaC / 34012 FlyBaseID:FBgn0002938 Length:1501 Species:Drosophila melanogaster
Sequence 2:NP_508420.1 Gene:hum-6 / 180539 WormBaseID:WBGene00002039 Length:2098 Species:Caenorhabditis elegans


Alignment Length:858 Identity:231/858 - (26%)
Similarity:391/858 - (45%) Gaps:151/858 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   326 DEKPEKMYP------EDLAAL----ENPVDENIIESLRHRILMGESYSFIGDILLSLN------- 373
            |.:...|:|      ||:..|    |:.:..|:....|.:::    |::.|.||:::|       
 Worm    50 DRRVRLMHPTSVQGVEDMCQLGDFHESAILRNLFIRYREKLI----YAYTGSILIAVNPYMDIAI 110

  Fly   374 --SNEIKQEFPQEFHAKYRFKSRSENQPHIFSVADIAYQDMLHHKEPQHIVLSGESYSGKSTNAR 436
              ::||:.         |:.|...|..||||::||.||.:|...|:.|.:::||||.:||:.:.:
 Worm   111 YTADEIRM---------YKRKRIGELPPHIFAIADNAYTNMRREKKNQSVIISGESGAGKTESTK 166

  Fly   437 LLIKHLCYLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMSGAVFNM 501
            |:::.|..:...:.....:|..:...:....||.|..|::|:|......:.|.::|.:.||....
 Worm   167 LVLQFLATISGQHSWIEQQVLEANPVLEAFGNAKTIRNDNSSRFGKYIDVHFNESGSIEGAKIEQ 231

  Fly   502 YMLEKLRVATTDGTQHNFHIFYYFYDFINQQNQLKEYNLKADRNYRYLRVPPEVPPSKLKYR-RD 565
            |:|||.|:.|....:.|:||||.....::::.: .|..|....:|.||     :....|... ||
 Worm   232 YLLEKSRIVTQSENERNYHIFYCLLAGLSREEK-SELELGTAADYYYL-----IQGKTLTAEGRD 290

  Fly   566 DPEGNVERYREFENILRDIDFNHKQLETVRKVLAAILNIGNIRFRQNGKYAEVENTDIVS----- 625
            |    .....|..:.:|.:..|.:::.::.|:||::|:|||||||||.. ..:|:.|:..     
 Worm   291 D----AADLAEIRSAMRVLMINEQEIGSIFKLLASLLHIGNIRFRQNTN-DNMESVDVADPSTLV 350

  Fly   626 RIAELLRVDEKKFMWSLTNFIMVKGGIAERR---QYTTEEARDARDAVASTLYSRLVDFIINRIN 687
            |||:||::.|:..:.::|...:|   ..|.|   :...::|.|||||:|..:|.:|...|:.|:|
 Worm   351 RIAKLLQLHEQNLLDAITTKSLV---TREERVISRLNGQQAVDARDALAKAIYGKLFIHIVRRVN 412

  Fly   688 MNMSFPRAVFGDTNAIIIHDMFGFECFNRNGLEQLMINTLNEQMQYHYNQRIFISEMLEMEAEDI 752
            ..:..|..  ....:|.|.|:||||.|..|..|||.||..||.:|..:...:|..|..|.:.|.|
 Worm   413 DAIYKPSQ--SRRTSIGILDIFGFENFESNSFEQLCINFANETLQQFFVHHVFKMEQKEYDEEHI 475

  Fly   753 DTINLNFYDNKTALDNLLTKPDGLFYIIDDASRSCQDQDLIMDRVSEKHSQFVKKHTATEI---- 813
            :..::.|.||:..:|.:..:|..:..:||:.|...:..|..|  :.:.||    .|...|:    
 Worm   476 NWRHIKFVDNQATVDLIAQRPLNILSLIDEESIFPKGTDKTM--LLKLHS----THGRNELYLQP 534

  Fly   814 --------SVAHYTGRIIYDTRAFTDINRDFVPPEMIETFRSSLDESIMLMFTNQLTKAGNLTMP 870
                    .|.|:.|.:.|:||.|.:.|||        :|  |.|.|:::    ..:|...|...
 Worm   535 KSELQRAFGVTHFAGNVFYNTRGFLEKNRD--------SF--SADLSVLI----SSSKMPFLARL 585

  Fly   871 FEAVQHKDESERKSYALNTLSAGCISQVNNLRTLAANFRFTCLTLLKMLSQNANLGVH--FVRCI 933
            |:.::: |.|.||..                 |:...||.:...|:..|:|     .|  |:|||
 Worm   586 FDDIEY-DTSSRKKV-----------------TVGNQFRRSLEQLMSQLTQ-----THPFFIRCI 627

  Fly   934 RADLEYKPRSFHSDVVQQQMKALGVLDTVIARQKGFSSRLPFDEFLRRYQFLAFDFDEPV----- 993
            :.:...:......|:|.:|::..|:::|:..|:.|:..|..:..|:.||:.|......||     
 Worm   628 KPNEMKRALVMDRDLVLRQLRYSGMMETIKIRRSGYPIRHDYYPFVFRYRVLVSSIQGPVNRIDL 692

  Fly   994 -EMTKDNCRLLFLRLKMEGWALGKTKVFLRYYNDEFLAR-LYELQVKKVIKVQSMMRALLARKRV 1056
             :..|..|.:: |....: :.||||||||:..:|..|.: .|.:...|.|.:|..:|..|.||..
 Worm   693 HDAAKKICHMI-LGTNAD-YQLGKTKVFLKDKHDLVLEQEYYRILKDKAIVIQKNVRRWLVRKDF 755

  Fly  1057 KGGKVFKLGKKGPEHHDVAASKIQKAFRGFRDRVRLPPLVNEKSGQLNENTADFIRPFAKKWREK 1121
                         |....||..||.|:|||..|.|...::   ||            |::.....
 Worm   756 -------------EKQRQAAVTIQTAWRGFDQRKRYRQII---SG------------FSRLQAVL 792

  Fly  1122 SIFQVLLHYRAAR 1134
            ...|::.||:..|
 Worm   793 RSRQLVSHYQTLR 805

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaCNP_523503.2 STKc_myosinIII_N_like 9..282 CDD:270785
MYSc_Myo21 346..1022 CDD:276848 195/713 (27%)
hum-6NP_508420.1 MYSc_Myo7 76..720 CDD:276832 195/717 (27%)
CBD_MYO6-like 738..>808 CDD:409646 25/96 (26%)
IQ 757..779 CDD:197470 10/21 (48%)
MyTH4 929..1168 CDD:214535
FERM1_F1_Myosin-VII 1172..1270 CDD:340612
B41 1174..1388 CDD:214604
FERM_C1_MyoVII 1382..1480 CDD:270019
SH3 1481..1544 CDD:473055
MyTH4 1624..1772 CDD:214535
FERM2_F1_Myosin-VII 1777..1875 CDD:340613
B41 1779..1993 CDD:214604
FERM_C2_MyoVII 1989..2087 CDD:270020
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.