DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Wnt4 and cwn-1

DIOPT Version :9

Sequence 1:NP_001260187.1 Gene:Wnt4 / 34007 FlyBaseID:FBgn0010453 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_493668.1 Gene:cwn-1 / 173399 WormBaseID:WBGene00000857 Length:372 Species:Caenorhabditis elegans


Alignment Length:382 Identity:111/382 - (29%)
Similarity:180/382 - (47%) Gaps:75/382 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 MGLGIGSNTNNMDMQQGLYNEHFISEHTVMAVFTSQGQVGGPCRYMPA-TRRQNHQCRKETGLPG 261
            :.||:.:|..:.|                        :.|..|:.:.. ||||...|:|...|..
 Worm    24 LALGLAANRFDRD------------------------KPGTSCKSLKGLTRRQMRFCKKNIDLME 64

  Fly   262 TLSEARRLATTHCEEQFRYDRWNCSIETRGKRNIFKKLY-----KETAFVHALTAAAMTHSIARA 321
            ::......|...|:.||...||||::.......:...::     :|:|||||:::||:.:.:.|.
 Worm    65 SVRSGSLAAHAECQFQFHKRRWNCTLIDPVTHEVIPDVFLYENTRESAFVHAISSAAVAYKVTRD 129

  Fly   322 CAEGRMTKCSCGPKK--HNREAQDFQWGGCNDNLKHGKRVTRSFLD--------LRGGDG----- 371
            ||.|...:|.|...|  |:.::| ||:.||:||:|.|..|::.|:|        ::..:|     
 Worm   130 CARGISERCGCDYSKNDHSGKSQ-FQYQGCSDNVKFGIGVSKEFVDSAQRRVLMMKDDNGTSLLG 193

  Fly   372 ------DEVSEILRHDSEVGIEAVSSQMMDKCKCHGVSGSCSMKTCWKKMADFNATATLLRQKYN 430
                  |.:..|..|:::.|.:.:...:..:|||||:||||.|:|||..:.:|......::.|::
 Worm   194 PSQLSADGMHMINLHNNQAGRQVLEKSLRRECKCHGMSGSCEMRTCWDSLPNFRHIGMAIKDKFD 258

  Fly   431 EAIRKAPNQRSMRQVSSSRMKKPKQRRKKPQQSQYTT--LYYLETSPSYCAV--------TKDRQ 485
            .|       ..::.|....::||:...|..|..::|.  |.|:..||.:|..        ||.||
 Worm   259 GA-------AEVKVVKEDGIEKPRIVMKNSQFKRHTNADLVYMTPSPDFCESDPLRGILGTKGRQ 316

  Fly   486 C-LHP---DNCGTLCCGRGYTTQVVKQVEKCRCRFNNGRCCQLICDYCQRLENKYFC 538
            | |.|   |:|..|||||||..:|....|||.|:|.  .||::.|:.||:...||.|
 Worm   317 CTLAPNAIDDCSLLCCGRGYEKKVQIVEEKCNCKFI--YCCEVRCEPCQKRIEKYLC 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Wnt4NP_001260187.1 wnt 246..539 CDD:278536 105/333 (32%)
cwn-1NP_493668.1 WNT1 44..372 CDD:128408 105/338 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.