DRSC/TRiP Functional Genomics Resources

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Protein Alignment mEFG1 and CG4849

DIOPT Version :9

Sequence 1:NP_609105.1 Gene:mEFG1 / 34004 FlyBaseID:FBgn0263133 Length:745 Species:Drosophila melanogaster
Sequence 2:NP_651605.1 Gene:CG4849 / 43358 FlyBaseID:FBgn0039566 Length:975 Species:Drosophila melanogaster


Alignment Length:861 Identity:187/861 - (21%)
Similarity:322/861 - (37%) Gaps:232/861 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 IRNIGISAHIDSGKTTLTERILFYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTL 106
            |||:.:..|:..||||..:.::..|....|..|.|   .:..| |::..|::||.:|::.....:
  Fly   131 IRNVALVGHLHHGKTTFVDCLIRQTHPQFETMEER---QLRYT-DTLFTEQERGCSIKATPVTLV 191

  Fly   107 WKDTN-----INIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCL 166
            .:|..     :||.||||||:|:.|...|:|:.||.||.:.|..||...|..:.:...:......
  Fly   192 LQDVKQKSYLLNIFDTPGHVNFSDEATAAMRMSDGVVLFIDAAEGVMLNTERLLKHAVQERQAIT 256

  Fly   167 AFINKLDRL-------GSNPYRVLSQMRSKMN-------------------HNAAFIQLPIGVES 205
            ..|||:|||       ..:.|..|..:..::|                   .|..|.....|.  
  Fly   257 VCINKIDRLILELKLPPQDAYFKLKHIVEEVNGLLSTYGAPDDNLLVSPILGNVCFASSLYGF-- 319

  Fly   206 NCKGIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVES----------------------LERRQE 248
             |..:....:..|..:||...:|. ...:..||...|                      ||...:
  Fly   320 -CFTLKSFAKLYADTYEGVAYLDF-AKRLWGDMYFNSKTRKFSKKQPHNSAQRSFVEFILEPMYK 382

  Fly   249 LI-EHLSNADETLGELFLE-----EKPFTEDDIKAALRRTCINRTFTPVLVGTALKNKGVQPLLD 307
            || :.:.:.|.||.:...|     .|...:.:|:..||..| ||     .:|..      ...:|
  Fly   383 LIAQVVGDVDTTLSDTLAELNVRVSKEEMKSNIRPLLRLVC-NR-----FMGDC------SGFVD 435

  Fly   308 AVLDYLPNPGE-----VENLGFIEKEGQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQL----- 362
            ..::::.:|.|     |:::....|||        :..||          .:...::|.|     
  Fly   436 MCVEHIKSPLENAKRKVDHIYTGPKEG--------DIYRD----------MISCNQYGTLMVHSS 482

  Fly   363 --------TYL----RCYQGVLRKGDNI------FNARTNKKVRIARLVRL---HSNQMEDVNEV 406
                    |:.    |...|.|..|..:      :..:..:..||.::.||   .|....::|.|
  Fly   483 KMYPNDDCTFFQVLARIVSGTLHAGQEVRVLGENYTLQDEEDSRILQVGRLWVFESRYKVELNRV 547

  Fly   407 YAGDIFALFGVDCASGDTFTTNPKNNLSMESIFVP-----EPVVSMAIKPNNTKDRDNFSKAIAR 466
            .||:...:.|:|.....|.|....|......||.|     :.::.:|::|.|..:.......:.:
  Fly   548 PAGNWVLIEGIDQCIVKTSTIVDINVPEDLYIFRPLKFNTQSIIKIAVEPVNPSELPKMLDGLRK 612

  Fly   467 FTKEDPTFHFFFDNDVKET---LVSGMGELHLEIYAQRMEREYG-CPVTLGKPKVAFRETLVG-- 525
            ..|..|    .....|:|:   ::.|.|||:|:.....:.:.|. ..:.:..|.|||.||:|.  
  Fly   613 VNKSYP----LLSTRVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETVVETS 673

  Fly   526 --PCEFDYLHKKQSGGSGQYARIIGVMEPLPP---------------NQNTLLEF---------- 563
              .|..:..:||.        :|..:.|||..               |:..:.||          
  Fly   674 SLKCFAETPNKKN--------KITMISEPLEKGLAEDIENGTVCINWNKKRIGEFFQVNYDWDLL 730

  Fly   564 ------------------VDETVGTNVPKQFVPGVE----KGYREMAEKGMLSGHKLSGIRFRLQ 606
                              ||:|:.:.|.|..:..|:    :|::....:|.|....:..::|::.
  Fly   731 AARSIWAFGPDSTGPNILVDDTLPSEVDKNLLTAVKDSIVQGFQWGTREGPLCEEPIRNVKFKIL 795

  Fly   607 D----------GGHHIVDSSE----LAFMLAAHGAIKEVFQNGSWQILEPIMLVEVTAPEEFQGA 657
            |          ||..|:.::.    .||::|..            :::||.:.|||.||.:...|
  Fly   796 DGVIANEALHRGGGQIIPTARRVAYSAFLMATP------------RLMEPYLFVEVQAPADCVSA 848

  Fly   658 VMGHLSKRHGIITGTEGTEG--WFTVYAEVPLNDMFGYAGELRSSTQGKGEFTMEYSRYSPCLP- 719
            |...|::|.|.:|......|  .:|:.|.:|..|.||:..:||:.|||:. |.:....:...:| 
  Fly   849 VYTVLARRRGHVTQDAPVSGSPIYTIKAFIPAIDSFGFETDLRTHTQGQA-FCLSVFHHWQIVPG 912

  Fly   720 DVQDQ--IVRQYQESQ 733
            |..|:  |:|..:..|
  Fly   913 DPLDKSIIIRPLEPQQ 928

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mEFG1NP_609105.1 EF-G 44..316 CDD:206673 74/330 (22%)
PRK12740 48..727 CDD:237186 182/847 (21%)
mtEFG1_II_like 347..427 CDD:293908 19/105 (18%)
EFG_III 441..516 CDD:293919 14/83 (17%)
EFG_mtEFG1_IV 519..636 CDD:238715 31/181 (17%)
mtEFG1_C 641..718 CDD:239764 26/78 (33%)
CG4849NP_651605.1 EFTUD2 4..111 CDD:292623
PTZ00416 115..957 CDD:240409 187/861 (22%)
Snu114p 132..340 CDD:206730 54/214 (25%)
Translation_Factor_II_like 477..568 CDD:295476 18/90 (20%)
snRNP_III 589..660 CDD:293921 13/74 (18%)
EF2_IV_snRNP 660..837 CDD:238840 36/196 (18%)
eEF2_C_snRNP 832..911 CDD:239765 26/79 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464567
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0480
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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