DRSC/TRiP Functional Genomics Resources

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Protein Alignment mEFG1 and eRF3

DIOPT Version :9

Sequence 1:NP_609105.1 Gene:mEFG1 / 34004 FlyBaseID:FBgn0263133 Length:745 Species:Drosophila melanogaster
Sequence 2:NP_001260415.1 Gene:eRF3 / 34658 FlyBaseID:FBgn0020443 Length:619 Species:Drosophila melanogaster


Alignment Length:531 Identity:96/531 - (18%)
Similarity:158/531 - (29%) Gaps:233/531 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KFSEHKPIERIRNIGISAHIDSGKTTLTERILFYTG----RIAEMHEVRGKDN------VGATMD 86
            |..|::......|:....|:|:||:|:..:|:..||    |..|.:|...::.      :...:|
  Fly   185 KVEENRSKREHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALD 249

  Fly    87 SMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCA-------- 143
            :.:.||.:|.|::....:......:..|:|.|||..|...:.......|.||||:.|        
  Fly   250 TNQEERDKGKTVEVGRAFFETDRKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEFETG 314

  Fly   144 ---------------VGGVQSQTL--------TVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQ 185
                           ..||:...:        |||....|||......:..|.:||.||.:.|:.
  Fly   315 FDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNWDQTRYNECKDKILPYLKKLGFNPAKDLTF 379

  Fly   186 MRSKMNHNAAFIQLPIGVESNCKGIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVESLERRQELI 250
            |                   .|.|:              .|..:: |:||               
  Fly   380 M-------------------PCSGL--------------SGYGLK-DQIP--------------- 395

  Fly   251 EHLSNADETL-----GELFLEEKPFTEDDIKAALRRTCINRTFTPVLVGTALKNKGVQPLLDAVL 310
                   |||     |..|:   ||.::               .|     :|..|...|.:..::
  Fly   396 -------ETLCPWYRGPAFI---PFIDE---------------LP-----SLNRKSDGPFIMPIV 430

  Fly   311 DYLPNPGEVENLGFIEKEGQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQLTYLRCYQGVLRKG 375
            |...:.|.|. :|.:|                                          .|..|||
  Fly   431 DKYKDMGTVV-MGKVE------------------------------------------SGTARKG 452

  Fly   376 DNIFNARTNKKVRIARL-----------------VRLHSNQMEDV----------NEVYAGDIF- 412
            .|:.......:|.:.:|                 ::|...:.|||          |.:..|.|| 
  Fly   453 QNLLVMPNRTQVAVDQLFSDDFEVTSVGPGENVKIKLKGIEEEDVSPGFVLCDAANPIKTGKIFD 517

  Fly   413 -----------------ALFGVDCASGDTFTTNPKNNLSMESIFVPEPVVSMAIKPNNTKDRDNF 460
                             |:..:.||:              |.:.| :.::.:..|.:..|     
  Fly   518 AQVVILEHKSIICAGYSAVMHIHCAA--------------EEVTV-KALICLVDKKSGDK----- 562

  Fly   461 SKAIARFTKED 471
            ||...||.|:|
  Fly   563 SKTRPRFVKQD 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mEFG1NP_609105.1 EF-G 44..316 CDD:206673 62/317 (20%)
PRK12740 48..727 CDD:237186 93/515 (18%)
mtEFG1_II_like 347..427 CDD:293908 18/124 (15%)
EFG_III 441..516 CDD:293919 8/31 (26%)
EFG_mtEFG1_IV 519..636 CDD:238715
mtEFG1_C 641..718 CDD:239764
eRF3NP_001260415.1 PAM2 12..28 CDD:284542
TEF1 191..619 CDD:227581 94/525 (18%)
EF1_alpha 197..416 CDD:206670 58/297 (20%)
eRF3_II 424..505 CDD:293906 17/123 (14%)
eRF3_C_III 511..617 CDD:294003 16/83 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464681
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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