DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mEFG1 and gfm1

DIOPT Version :9

Sequence 1:NP_609105.1 Gene:mEFG1 / 34004 FlyBaseID:FBgn0263133 Length:745 Species:Drosophila melanogaster
Sequence 2:XP_002933285.1 Gene:gfm1 / 100494046 XenbaseID:XB-GENE-983072 Length:748 Species:Xenopus tropicalis


Alignment Length:748 Identity:485/748 - (64%)
Similarity:596/748 - (79%) Gaps:18/748 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LRALKSLGKAGYSS--HAKFSEHKPI---------------ERIRNIGISAHIDSGKTTLTERIL 63
            :|.|:...|.|..:  ::..:.:||:               ||||||||||||||||||||||:|
 Frog     1 MRLLREASKLGSQALRYSGITRNKPLPLTFCRYCSSGIVPNERIRNIGISAHIDSGKTTLTERVL 65

  Fly    64 FYTGRIAEMHEVRGKDNVGATMDSMELERQRGITIQSAATYTLWKDTNINIIDTPGHVDFTVEVE 128
            :||||||:||||:|||.|||.|||||||||||||||||||||:||||||||||||||||||:|||
 Frog    66 YYTGRIAQMHEVKGKDGVGAVMDSMELERQRGITIQSAATYTMWKDTNINIIDTPGHVDFTIEVE 130

  Fly   129 RALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRLGSNPYRVLSQMRSKMNHN 193
            ||||||||||||||||||||.||:||||||||||||.|.||||||||||||.|.:.|:|||:|||
 Frog   131 RALRVLDGAVLVLCAVGGVQCQTMTVNRQMKRYNVPFLTFINKLDRLGSNPNRAVQQLRSKLNHN 195

  Fly   194 AAFIQLPIGVESNCKGIVDLVREKAIYFEGEHGMDIRLDEIPQDMRVESLERRQELIEHLSNADE 258
            |||:|:|||:||..|||:|||.|:|:||:||.|..:|.::||.:.|.|:::|||||||.::|:||
 Frog   196 AAFVQIPIGIESKFKGIIDLVEERAMYFDGEFGQTMRYEDIPAEFRAEAMDRRQELIESVANSDE 260

  Fly   259 TLGELFLEEKPFTEDDIKAALRRTCINRTFTPVLVGTALKNKGVQPLLDAVLDYLPNPGEVENLG 323
            .|||:|||||..|..|:|.|:||..:.|.|||||||:|||||||||||:|||:|||||.||:|..
 Frog   261 ILGEMFLEEKIPTVSDLKLAIRRATLKRLFTPVLVGSALKNKGVQPLLEAVLEYLPNPSEVQNFA 325

  Fly   324 FIEKE-GQDPEKVVLNPARDGKDPFVGLAFKLEAGRFGQLTYLRCYQGVLRKGDNIFNARTNKKV 387
            .:..| .::..|:::|..||...|||||||||||||||||||:|.|||:|:|.|.|||.||.|||
 Frog   326 ILNHENSEEATKILMNSVRDSSQPFVGLAFKLEAGRFGQLTYVRVYQGMLQKSDYIFNTRTGKKV 390

  Fly   388 RIARLVRLHSNQMEDVNEVYAGDIFALFGVDCASGDTFTTNPKNNLSMESIFVPEPVVSMAIKPN 452
            |:.||||||::.||||.|.|||||.||||:|||||||||:...:|||||||.||:||:|:|:||.
 Frog   391 RVQRLVRLHADMMEDVEEAYAGDICALFGIDCASGDTFTSKSNDNLSMESIHVPDPVISVAMKPT 455

  Fly   453 NTKDRDNFSKAIARFTKEDPTFHFFFDNDVKETLVSGMGELHLEIYAQRMEREYGCPVTLGKPKV 517
            |..|.|.|||.|:|||:|||||...::.:.|||::|||||||||||||||||||.||..:|||||
 Frog   456 NKNDLDKFSKGISRFTREDPTFRVHYEVESKETIISGMGELHLEIYAQRMEREYACPCVMGKPKV 520

  Fly   518 AFRETLVGPCEFDYLHKKQSGGSGQYARIIGVMEPLPPNQNTLLEFVDETVGTNVPKQFVPGVEK 582
            |||||:.....||:.|||||||:|||.::||.:|||.....|.|||.|:||||||||||||.||:
 Frog   521 AFRETISKTVPFDFTHKKQSGGAGQYGKVIGFLEPLEAENYTKLEFEDKTVGTNVPKQFVPAVER 585

  Fly   583 GYREMAEKGMLSGHKLSGIRFRLQDGGHHIVDSSELAFMLAAHGAIKEVFQNGSWQILEPIMLVE 647
            |:||..|||.|:|||:||:||.|:||.||:|||:|::|:.|..||:|:..:|.:..||||||.||
 Frog   586 GFREACEKGPLTGHKISGLRFVLEDGAHHMVDSNEISFIRAGEGALKQAMENATVCILEPIMSVE 650

  Fly   648 VTAPEEFQGAVMGHLSKRHGIITGTEGTEGWFTVYAEVPLNDMFGYAGELRSSTQGKGEFTMEYS 712
            |.||.||||.|:..:::|||:|.|.:|:||:||:||:||||||||||.||||.|:||||:|||||
 Frog   651 VVAPSEFQGPVIAGINRRHGVIVGQDGSEGYFTLYADVPLNDMFGYASELRSCTEGKGEYTMEYS 715

  Fly   713 RYSPCLPDVQDQIVRQYQESQGLAQPDKKKKKN 745
            ||.|||...|::::.:|.|:.|.....|.|.|:
 Frog   716 RYQPCLASTQEELINKYLEATGQLPAKKGKAKS 748

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mEFG1NP_609105.1 EF-G 44..316 CDD:206673 208/271 (77%)
PRK12740 48..727 CDD:237186 465/679 (68%)
mtEFG1_II_like 347..427 CDD:293908 62/79 (78%)
EFG_III 441..516 CDD:293919 48/74 (65%)
EFG_mtEFG1_IV 519..636 CDD:238715 69/116 (59%)
mtEFG1_C 641..718 CDD:239764 53/76 (70%)
gfm1XP_002933285.1 PRK12740 50..729 CDD:237186 465/678 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 435 1.000 Domainoid score I568
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H6449
Inparanoid 1 1.050 1002 1.000 Inparanoid score I300
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D220174at33208
OrthoFinder 1 1.000 - - FOG0003241
OrthoInspector 1 1.000 - - oto102913
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2192
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

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