DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvf3 and Pgf

DIOPT Version :9

Sequence 1:NP_001097107.1 Gene:Pvf3 / 33995 FlyBaseID:FBgn0085407 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_446047.1 Gene:Pgf / 94203 RGDID:619850 Length:158 Species:Rattus norvegicus


Alignment Length:93 Identity:29/93 - (31%)
Similarity:42/93 - (45%) Gaps:11/93 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   458 NQVLKEATCRIPQKRCQLVQQDP---SKIYTPHCTILHRCSEDSGCCPSRSQICAAKSTHNVELH 519
            |:|...:.||..:|...:..:.|   |.|::|.|.:|.||   ||||......|.|..|.|:.:.
  Rat    40 NEVWGRSYCRPMEKLVYIADEHPNEVSHIFSPSCVLLSRC---SGCCGDEGLHCVALKTANITMQ 101

  Fly   520 FFVKSSKHR---SVIEKRTFVNHTECHC 544
             .:|...:|   |.:| .||.....|.|
  Rat   102 -ILKIPPNRDPHSYVE-MTFSQDVLCEC 127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pvf3NP_001097107.1 PDGF 464..547 CDD:238079 27/87 (31%)
PgfNP_446047.1 PDGF 46..129 CDD:197537 27/87 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 136..158
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1364454at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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