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Protein Alignment Pvf3 and Vegfb
DIOPT Version :9
Sequence 1: | NP_001097107.1 |
Gene: | Pvf3 / 33995 |
FlyBaseID: | FBgn0085407 |
Length: | 651 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_006230972.1 |
Gene: | Vegfb / 89811 |
RGDID: | 619799 |
Length: | 207 |
Species: | Rattus norvegicus |
Alignment Length: | 121 |
Identity: | 26/121 - (21%) |
Similarity: | 46/121 - (38%) |
Gaps: | 23/121 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 455 AHMNQVLK------EATCRIPQKRCQLVQQ---DPSKIYTPHCTILHRCSEDSGCCPSRSQICAA 510
:|..:|:. .|||:..:....|..: :..|...|.|..:.|| .||||.....|..
Rat 30 SHQKKVVSWIDVYARATCQPREVVVPLSMELMGNVVKQLVPSCVTVQRC---GGCCPDDGLECVP 91
Fly 511 KSTHNVELHFFV---KSSKHRSVIEKRTFVNHTECHC----IERSTYNEETAMAHY 559
...|.|.:...: .||: :.:.:...|::|.| .|.:...:..|:.|:
Rat 92 IGQHQVRMQILMIQYPSSQ----LGEMSLEEHSQCECRPKRKESAVKPDRVAIPHH 143
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Pvf3 | NP_001097107.1 |
PDGF |
464..547 |
CDD:238079 |
21/92 (23%) |
Vegfb | XP_006230972.1 |
PDGF |
45..126 |
CDD:197537 |
21/87 (24%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1364454at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.920 |
|
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