DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvf3 and Pgf

DIOPT Version :9

Sequence 1:NP_001097107.1 Gene:Pvf3 / 33995 FlyBaseID:FBgn0085407 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_032853.1 Gene:Pgf / 18654 MGIID:105095 Length:158 Species:Mus musculus


Alignment Length:101 Identity:27/101 - (26%)
Similarity:40/101 - (39%) Gaps:27/101 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   458 NQVLKEATCRIPQKRCQLVQQDP---SKIYTPHCTILHRCSEDSGCCPSRSQICAAKSTHNVEL- 518
            |:|...:.||..:|...::.:.|   |.|::|.|.:|.||   ||||......|....|.|:.: 
Mouse    40 NEVWGRSYCRPMEKLVYILDEYPDEVSHIFSPSCVLLSRC---SGCCGDEGLHCVPIKTANITMQ 101

  Fly   519 ----------HFFVKSSKHRSVIEKRTFVNHTECHC 544
                      ||:|          :.||.....|.|
Mouse   102 ILKIPPNRDPHFYV----------EMTFSQDVLCEC 127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pvf3NP_001097107.1 PDGF 464..547 CDD:238079 25/95 (26%)
PgfNP_032853.1 PDGF 46..129 CDD:197537 25/95 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 136..158
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1364454at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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