DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvf3 and Vegfc

DIOPT Version :9

Sequence 1:NP_001097107.1 Gene:Pvf3 / 33995 FlyBaseID:FBgn0085407 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_446105.1 Gene:Vegfc / 114111 RGDID:619800 Length:415 Species:Rattus norvegicus


Alignment Length:215 Identity:53/215 - (24%)
Similarity:90/215 - (41%) Gaps:59/215 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   452 LAHAHMN-QVLK-------EATCRIPQKRCQLVQQD----PSKIYTPHCTILHRCSEDSGCCPSR 504
            ||.||.| ::||       :..| :|::.|..|.::    .:..:.|.|..::||   .|||.|.
  Rat   105 LAAAHYNTEILKSIDNEWRKTQC-MPREVCIDVGKEFGAATNTFFKPPCVSVYRC---GGCCNSE 165

  Fly   505 SQICAAKSTHNVELHFF---VKSSKHRSVIEKRTFVNHTECHCIER-STYNEETAMAHYGQSVVR 565
            ...|...||..:....|   |..|:....: ..:|.|||.|.|:.: ..|.:    .|   |::|
  Rat   166 GLQCMNTSTGYLSKTLFEITVPLSQGPKPV-TISFANHTSCRCMSKLDVYRQ----VH---SIIR 222

  Fly   566 ----ATILSC-----TCPKSFEKILQDDGQCRC--------------DCSSGNYD-CDWLKRGNE 606
                ||:..|     |||.::   :.::..|:|              |.|:|.:| |.    .|:
  Rat   223 RSLPATLPQCQAANKTCPANY---VWNNYMCQCLAQQDFIFYSNVEDDSSNGFHDVCG----PNK 280

  Fly   607 HFAMNDRKCIQQGRCKPPTC 626
            ....:..:|:.:|..:|.:|
  Rat   281 ELDEDTCQCVCKGGLRPSSC 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pvf3NP_001097107.1 PDGF 464..547 CDD:238079 24/89 (27%)
VegfcNP_446105.1 PDGF 127..207 CDD:278756 23/84 (27%)
4 X 16 AA repeats of C-X(10)-C-X-C-X(1,3)-C 276..358 6/29 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1364454at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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