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Protein Alignment Pvf2 and vegfd
DIOPT Version :9
Sequence 1: | NP_523499.2 |
Gene: | Pvf2 / 33994 |
FlyBaseID: | FBgn0031888 |
Length: | 405 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001035268.1 |
Gene: | vegfd / 678512 |
ZFINID: | ZDB-GENE-070810-6 |
Length: | 272 |
Species: | Danio rerio |
Alignment Length: | 163 |
Identity: | 42/163 - (25%) |
Similarity: | 68/163 - (41%) |
Gaps: | 38/163 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 206 VPRPEVVHITRE--TNT--FYSPRATILHRCSDKVGCCN-AGWTCQMKRNETVDRVFDKVDGRS- 264
:||...|.:.:| ||| |:.|....:.||. |||| .|.|| ||.::..|...:...|
Zfish 108 MPRETCVDVAKELGTNTAVFFKPPCVSVFRCG---GCCNKEGVTC---RNTSMTYVNKTILSVSL 166
Fly 265 ------NEPIVISMENHTECGCVKVETRRKRSPICLCPKHFKDFSWAGSRAQWENEEHLELRLWE 323
.||:::.:.|||||.|.:....|:.:. .:|.|: |.:.:|...:.....:..:|:
Zfish 167 APYISGPEPVLVKIANHTECKCQEHSLIRRHAR----ERHRKN-SCSPTRKPEDKRLCNKGLIWD 226
Fly 324 RREQRC---------------RCDCHLSDETCK 341
...:|| ..||.:..|.|:
Zfish 227 WMAERCVTYPSSKQEPPSAITEEDCEMDVERCE 259
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Pvf2 | NP_523499.2 |
PDGF |
204..280 |
CDD:294083 |
29/85 (34%) |
vegfd | NP_001035268.1 |
PDGF |
107..188 |
CDD:278756 |
29/85 (34%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1364454at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
ZFIN |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.920 |
|
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