DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pvf2 and Pdgfd

DIOPT Version :10

Sequence 1:NP_523499.2 Gene:Pvf2 / 33994 FlyBaseID:FBgn0031888 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_076452.1 Gene:Pdgfd / 66018 RGDID:621880 Length:370 Species:Rattus norvegicus


Alignment Length:196 Identity:49/196 - (25%)
Similarity:78/196 - (39%) Gaps:41/196 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 QGRSLSGVHWGQGDDNHLSSDAAVDGSDDYPSDQPGDLT--VLKERIAEQNSVEKL--------- 174
            |..:.|.::|    ::..||.:.|  |...||.....||  .|.:.|||.::||.|         
  Rat   174 QPEAASEINW----ESVTSSFSGV--SYHSPSVMDSTLTADALDKAIAEFDTVEDLLKYFNPASW 232

  Fly   175 ---------RTMKYNNNRTRELKKRVEAHRLMMAKEGICRVPRPEVVHITRE---TNTFYSPRAT 227
                     .|.:|......|.|.:|:..||....:.....||...|::..|   ||..:.||..
  Rat   233 QDDLENLYMDTPRYRGRSYHERKSKVDLDRLNDDVKRYSCTPRNHSVNLREELKLTNAVFFPRCL 297

  Fly   228 ILHRCSDKVGCCNAGW-TCQMKRNETVDRVFD---------KVDGRS-NEPIV-ISMENHTECGC 280
            ::.||....||....| :|.....:||.:..:         |..|:: |..:| |.:::|..|.|
  Rat   298 LVQRCGGNCGCGTLNWKSCTCSSGKTVKKYHEVLKFEPGHFKRRGKAKNMALVDIQLDHHERCDC 362

  Fly   281 V 281
            :
  Rat   363 I 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pvf2NP_523499.2 PDGF 204..281 CDD:444701 23/91 (25%)
PdgfdNP_076452.1 CUB 55..169 CDD:238001
PDGF 270..365 CDD:238079 24/94 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.