DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvf2 and vegfc

DIOPT Version :9

Sequence 1:NP_523499.2 Gene:Pvf2 / 33994 FlyBaseID:FBgn0031888 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_991297.1 Gene:vegfc / 403049 ZFINID:ZDB-GENE-040303-4 Length:396 Species:Danio rerio


Alignment Length:291 Identity:61/291 - (20%)
Similarity:107/291 - (36%) Gaps:100/291 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 SDAAVDGSDD---YPSDQPGDLTV-----LKERIAEQNSVEKLRTMKY----------------- 179
            ::.|.:.|.|   |..||...:..     |.|::....||::|..:.|                 
Zfish    16 ANLAFESSHDYYEYDQDQADAMQEHSEPDLVEQLRSAGSVDELMRIVYPTYRIMLKCRSKMGSRL 80

  Fly   180 -----NNNRTR-------------ELKKRVEAHRLMMAKEGICRVPRPEVVHITRE---TNTFYS 223
                 ::..||             ||.|.:|    :..::.:| :||...:.:.:|   |||||.
Zfish    81 LRREPSSTETRSEEASFAAAFINLELLKSIE----IEWRKTLC-MPRQVCLDVGKEFGATNTFYK 140

  Fly   224 PRATILHRCSDKVGCCNA-GWTCQMKRNETVDRVFDKVD---GRSNEPIVISMENHTECGCVKVE 284
            |....::||.   ||||: ...|:......:.:...::.   .:..:|:.||..|||.|.|:..:
Zfish   141 PPCVSVYRCG---GCCNSEELQCRNISTSYISKTLFEITVPVKQGTKPVTISFANHTSCSCLSKQ 202

  Fly   285 T--RRKRSPI------C-----LCPKHFKDFSWAGSRAQ-------WENEEHLELRL------WE 323
            .  |::.|.|      |     .||   |:.||:....:       ..::.|.:...      .|
Zfish   203 NLYRQQHSIIRRALTECHVANKTCP---KNHSWSNHLCKCVLLPDTLHSKPHSDFETDFCGPDKE 264

  Fly   324 RREQRCRCDC-------------HLSDETCK 341
            ..|:.|:|:|             :|...||:
Zfish   265 LDEETCQCECRKELRKAGCGPHHYLDKNTCQ 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pvf2NP_523499.2 PDGF 204..280 CDD:294083 24/82 (29%)
vegfcNP_991297.1 PDGF 117..200 CDD:197537 25/86 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1364454at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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