DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvf2 and Pvf3

DIOPT Version :9

Sequence 1:NP_523499.2 Gene:Pvf2 / 33994 FlyBaseID:FBgn0031888 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_001097107.1 Gene:Pvf3 / 33995 FlyBaseID:FBgn0085407 Length:651 Species:Drosophila melanogaster


Alignment Length:420 Identity:101/420 - (24%)
Similarity:176/420 - (41%) Gaps:83/420 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 IVITFSKTTHAYSSF--PTDINS---NYFD-----------VRN---STLPMTMTTSHPQTNRP- 62
            ||.:.::.::.|.|.  |.|.::   |.||           |:.   :|...|.|||...|.:| 
  Fly   249 IVSSSNRNSNKYPSVANPHDKSAGKRNIFDWLFKHDREKEAVKKPHITTTSTTTTTSTTSTVKPT 313

  Fly    63 LARYVLPPNELHTA-------DEDEESSDLEPYFEDRAVQRDRSYLIRLIRRRVPRDQAPQQVIL 120
            :.|...|..:|..|       :||:.:.|.:...|:.......:   ::..:...|.|..|:.:|
  Fly   314 IMRTERPKLQLIDANLKNGGGEEDDSNEDSDSESEEGFSNEQWN---KIEHQHHLRQQKHQKELL 375

  Fly   121 QGRSLS-GVHWGQGDDNHLSSDAAVDGSD----------DYPSDQPGDLTVLKERIAEQNSVEKL 174
            ..|..| .....:..:|.:|:...::.:|          :|.:.:.|...  ::::....:|.|.
  Fly   376 AMREKSRNTPLIRNIENEVSAAKTLEDNDGHDVENIYARNYVAAKVGQKK--EDQLGTPEAVIKA 438

  Fly   175 RTMKYNNNRTRELKKRVEAHRLMMAKEGICRVPRPEVVHITRETNTFYSPRATILHRCSDKVGCC 239
            |.:.....::.  :....||...:.||..||:|:.....:.::.:..|:|..|||||||:..|||
  Fly   439 RRLHAQKQKSE--RALAHAHMNQVLKEATCRIPQKRCQLVQQDPSKIYTPHCTILHRCSEDSGCC 501

  Fly   240 -NAGWTCQMKRNETVDRVFDKVDGRSNEPIV--ISMENHTECGCVKVETRRKRSPI--------- 292
             :....|..|....|:..| .|....:..::  .:..|||||.|::..|..:.:.:         
  Fly   502 PSRSQICAAKSTHNVELHF-FVKSSKHRSVIEKRTFVNHTECHCIERSTYNEETAMAHYGQSVVR 565

  Fly   293 -----CLCPKHFKDFSWAGSRAQWENEEHLELRLWERREQRCRCDCHLSDETCKRLKNGVEGFSV 352
                 |.|||.|              |:.|:      .:.:|||||...:..|..||.|.|.|::
  Fly   566 ATILSCTCPKSF--------------EKILQ------DDGQCRCDCSSGNYDCDWLKRGNEHFAM 610

  Fly   353 MERRRIQSGEVSPPFCNYGAYDVRNGRCPR 382
            .:|:.||.|...||.|.:|.|..::||||:
  Fly   611 NDRKCIQQGRCKPPTCEFGLYMDKHGRCPK 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pvf2NP_523499.2 PDGF 204..280 CDD:294083 25/78 (32%)
Pvf3NP_001097107.1 PDGF 464..547 CDD:238079 26/83 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2BMEN
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1364454at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR21719
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.920

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