DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvf2 and vegfbb

DIOPT Version :9

Sequence 1:NP_523499.2 Gene:Pvf2 / 33994 FlyBaseID:FBgn0031888 Length:405 Species:Drosophila melanogaster
Sequence 2:XP_003200919.3 Gene:vegfbb / 100535766 ZFINID:ZDB-GENE-091204-285 Length:152 Species:Danio rerio


Alignment Length:88 Identity:20/88 - (22%)
Similarity:36/88 - (40%) Gaps:14/88 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 ICRVPRPEVVHITRETNT----FYSPRATILHRCSDKVGCC-NAGWTC-QMKRNETV---DRVFD 258
            :|: ||..:|.:..|.:.    ...|....|.||.   ||| :....| .:.::.|:   .:...
Zfish    65 LCK-PRETLVKVEDEFSEVMLGHVVPSCVPLQRCG---GCCSDEAMVCVNVAKHTTIIQLQQYAT 125

  Fly   259 KVDGRSNEPIV-ISMENHTECGC 280
            ..:|...|.|: :....|::|.|
Zfish   126 DSEGNMAESIIELPFVEHSQCQC 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pvf2NP_523499.2 PDGF 204..280 CDD:294083 19/85 (22%)
vegfbbXP_003200919.3 PDGF 66..148 CDD:278756 19/85 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1364454at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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