DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pvf2 and vegfa

DIOPT Version :9

Sequence 1:NP_523499.2 Gene:Pvf2 / 33994 FlyBaseID:FBgn0031888 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_001107704.1 Gene:vegfa / 100038089 XenbaseID:XB-GENE-485744 Length:311 Species:Xenopus tropicalis


Alignment Length:230 Identity:47/230 - (20%)
Similarity:79/230 - (34%) Gaps:73/230 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 SGVHWGQG-----DDNHLSSDAAVDGSDDY-PSDQPGDLTVLKERIAEQNSVEKLRTMKYNNNRT 184
            |.:|||..     ....||..|.:.|..|: |::                      .:|:     
 Frog     6 SWIHWGLAVLLYIPHAQLSGAAPMPGEGDHKPTE----------------------VVKF----- 43

  Fly   185 RELKKRVEAHRLMMAKEGICRVPRPEVVHITR----ETNTFYSPRATILHRCSDKVGCCN-AGWT 244
                       |.:.:..:|:| |..:|.|.:    |....:.|....|.||:   |||| ....
 Frog    44 -----------LKVYERSMCQV-REILVDIFQEYPDEVEYIFKPSCVPLMRCA---GCCNDESLE 93

  Fly   245 CQMKRNETVDRVFDKVDGRSNEPIV-ISMENHTECGC-VKVETRRKRSPIC-LCPKHFKDFSWAG 306
            |....:..:.....|:....::.|: :|.:.|::|.| .|.|.:.|:...| .|           
 Frog    94 CVPTESYNITMQIMKIKPHISQHIMDMSFQQHSQCECRPKKEVKSKQENHCEPC----------- 147

  Fly   307 SRAQWENEEHLELRLWERREQRCRCDCHLSDETCK 341
                  .|:.....|:.:..|.|:|.|..:|..||
 Frog   148 ------TEKSQRKHLFVQDPQTCKCSCKNTDSRCK 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pvf2NP_523499.2 PDGF 204..280 CDD:294083 20/81 (25%)
vegfaNP_001107704.1 PDGF 52..130 CDD:278756 20/81 (25%)
VEGF_C 139..188 CDD:291235 12/55 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1364454at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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