DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and HNRNPDL

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_112740.1 Gene:HNRNPDL / 9987 HGNCID:5037 Length:420 Species:Homo sapiens


Alignment Length:271 Identity:72/271 - (26%)
Similarity:112/271 - (41%) Gaps:49/271 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 GGRYGDRDKDRRSRDRRGGSKSLQVDRSRDKRRRSRSRDQQRKRLSPIRERKRSHSRSRDRNSRR 206
            |.|...|....:...|..|..:::..|    |||            |...|:...|.|..|::..
Human    53 GARRAQRHVTAQQPSRLAGGAAIKGGR----RRR------------PDLFRRHFKSSSIQRSAAA 101

  Fly   207 RGTNSPRRRSPPNGADRTTPTE------------------LSPEERDARTVFCIQLSQRVRARDL 253
            .......|:.||  ||.:...|                  .|..::|...:|...||.....:||
Human   102 AAATRTARQHPP--ADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDL 164

  Fly   254 EEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNR 318
            .|:.|..|:|.|..:.|...|.|.:|..::.|.|..||...|.|...:|.|..|..:..:|.|.:
Human   165 TEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGK 229

  Fly   319 LQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITY 383
                    :|     |.:::||.|..:.:|:.::..|..||:|:.|:|.|||:|...:|:.||||
Human   230 --------EP-----PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 281

  Fly   384 HNADDAKKALE 394
            .:.:..||.||
Human   282 TDEEPVKKLLE 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 58/200 (29%)
HNRNPDLNP_112740.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..83 9/45 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 96..120 6/25 (24%)
RRM1_hnRPDL 149..224 CDD:410152 23/74 (31%)
RRM2_hnRPDL 234..308 CDD:409998 23/59 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 313..348
Necessary for interaction with TNPO1. /evidence=ECO:0000269|PubMed:9524220 342..420
Necessary for its nuclear import and export 396..420
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 398..420
Blue background indicates that the domain is not in the aligned region.

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