DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and AT5G19350

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_197436.1 Gene:AT5G19350 / 832055 AraportID:AT5G19350 Length:425 Species:Arabidopsis thaliana


Alignment Length:359 Identity:73/359 - (20%)
Similarity:134/359 - (37%) Gaps:93/359 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 PPNGADRTTPTELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIA 281
            ||.|:.....|     ..:.||::...|...|....|...||..|::..|::|....|.:.:|..
plant     9 PPQGSYHHPQT-----LEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYG 68

  Fly   282 YIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKN----------------RLQNAAPAFQPKS 330
            :|||                       :.|..||:.                ||..|:.....|.
plant    69 FIEF-----------------------ISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKV 110

  Fly   331 HTGP-MRLYVGSLHFNITEDMLRGIFE-PFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKAL 393
            ..|| ..::||.|..::|:.:|:..|. .:..:...:::.|..|||||||||:.:....:..:|:
plant   111 DAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAM 175

  Fly   394 EQLNGFELAGRLMKVGNVTERLDMNTTSLDTDEMDRTGIDLGATGRLQLMFKLAEGAGLAVPQAA 458
            .::||...:.|.|::...|.:.::.                     :|..:.......:.||.|.
plant   176 AEMNGLYCSTRPMRISAATPKKNVG---------------------VQQQYVTKAVYPVTVPSAV 219

  Fly   459 ANALLATAPQPAPLQQQEVAPSIATQCFILS--NMFDPRTETNPTWDVEIRDDVLEEC-AKHGGV 520
            |          ||:|.....|.....|..:|  |:           |..:.::.|::. ::.|.|
plant   220 A----------APVQAYVAPPESDVTCTTISVANL-----------DQNVTEEELKKAFSQLGEV 263

  Fly   521 LHIHVDTISHTGTVYVKCPSTTTAVLAVNALHGR 554
            :::.:......|  ||:..:..:|..||..:.|:
plant   264 IYVKIPATKGYG--YVQFKTRPSAEEAVQRMQGQ 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 73/359 (20%)
AT5G19350NP_197436.1 RRM1_SECp43_like 25..105 CDD:409780 20/102 (20%)
RRM2_SECp43_like 115..194 CDD:409781 21/78 (27%)
RRM_SF 237..306 CDD:473069 13/72 (18%)

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