DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and AT5G09880

DIOPT Version :9

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_568220.1 Gene:AT5G09880 / 830848 AraportID:AT5G09880 Length:527 Species:Arabidopsis thaliana


Alignment Length:602 Identity:229/602 - (38%)
Similarity:312/602 - (51%) Gaps:116/602 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DFDVEAMLEAPYMKNNVSAGSGGSGGRKRSGSSPGGGGGHDDDY--AENGPRNGSGGGSSHKKQS 66
            :||     |..|::..|..|:|.:..::.||:...     :..|  .|.|.|.|..||...:..|
plant     2 EFD-----EYEYLEKTVEEGAGSNKKKEESGNERS-----ERSYRKREGGERQGEEGGEEERVSS 56

  Fly    67 KRSRSR-SGSRDGKSRRDRGNER-SSHRDKDKERDRNRDGGDRDRHRREGGDRDRERERER---E 126
            :..:|| .|..:|..:|||..|| .|.||||:|||:.|:           |.||:|.:|||   |
plant    57 RSKKSRGDGEENGGGKRDRERERHRSSRDKDRERDKVRE-----------GSRDKESDRERSSKE 110

  Fly   127 RDRSRRSRSRDERGGGGRYGDRDKDRRSRDRRGGSKSLQVDRSRDKRRRSRSRDQQRKRLSPIRE 191
            ||||                ||||. |.|:|          |.|:||..||||            
plant   111 RDRS----------------DRDKP-RDRER----------REREKRSSSRSR------------ 136

  Fly   192 RKRSHSRSRDRNSRRRGTNSPRRRSPPNGADRTTPTELSPEERDARTVFCIQLSQRVRARDLEEF 256
            |:.......:|.|||.             .|:....|..| |||.||||..|:..:...||:.||
plant   137 REEKEPEVVERGSRRH-------------RDKKDEPEADP-ERDQRTVFAYQMPLKATERDVYEF 187

  Fly   257 FSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQN 321
            ||..|||||||||....::|.||:.||||.|..||.:|:.||||..||.|:||:.::||||..|:
plant   188 FSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQS 252

  Fly   322 AAPAFQPKSHTGP--MRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYH 384
            .:...   ..|||  .:||||:||||::|..||.|||.||.::.:||.:|.|||:.||:|||.:.
plant   253 NSTTV---GGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFV 314

  Fly   385 NADDAKKALEQLNG-FELAGRLMKVGNVTERL---DMNTTSLDTDEMDRTGIDLGATGRLQLMFK 445
            ..:.:|.|...||| .|:|||.:||.:|::.:   |....|.|.|:.|..|:.|.|..|..||.|
plant   315 QLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQSRAMLMQK 379

  Fly   446 LAEGAGLA--------VP---QAAAN----------ALLATAPQPAPLQQQEVAPSIATQCFILS 489
            | :.:|:|        ||   .||.|          ::|.|...|:.:.:....||   :|.:|.
plant   380 L-DRSGIATSIVGSLGVPGLNGAAFNQPGMNPSFPTSVLPTTAIPSFVNEHVGLPS---ECLLLK 440

  Fly   490 NMFDPRTETNPTWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNALHGR 554
            |||||.|||.|.:|:||||||.:||:|:|.|.||:||..| .|.||::..|...|..|..|:|.|
plant   441 NMFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDKNS-AGFVYLRFQSVEAAAAAQRAMHMR 504

  Fly   555 WFAGRVITAAYVPVINY 571
            |||.::|:|.::|...|
plant   505 WFAQKMISATFMPPHEY 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 RRM1_RBM39_like 238..310 CDD:240729 38/71 (54%)
RRM2_RBM23_RBM39 337..409 CDD:240730 37/72 (51%)
RBM39linker 425..500 CDD:292157 32/95 (34%)
RRM3_RBM39_like 483..567 CDD:240731 42/83 (51%)
AT5G09880NP_568220.1 SF-CC1 85..517 CDD:273721 199/503 (40%)
RRM1_RBM39_like 169..241 CDD:240729 38/71 (54%)
RRM2_RBM23_RBM39 267..340 CDD:240730 37/72 (51%)
RBM39linker 366..452 CDD:292157 29/89 (33%)
RRM3_RBM39_like 434..517 CDD:240731 43/86 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 72 1.000 Domainoid score I3310
eggNOG 1 0.900 - - E1_KOG0147
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 320 1.000 Inparanoid score I708
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002599
OrthoInspector 1 1.000 - - otm3449
orthoMCL 1 0.900 - - OOG6_101917
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1707
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.720

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