Protein Alignment Caper and tia1

DIOPT Version :10

• Sequence 1: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: NP_997793.1
• Gene: tia1 / 793165
• ZFINID: ZDB-GENE-030131-1506
• Length: 386
• Species: Danio rerio
• Alignment Length: 298
• Identity: 70/298 - (23%)
• Similarity: 124/298 - (41%)
• Gaps: 63/298 - (21%)

  Fly   232 EERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALAL- 295
            ::...:|::...||:.|....:.:.|..:|..:..::|.  .|.......::||.:....|.:|
Zfish     3 DDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIV--DTAGNDPYCFVEFFEHRHAAASLA 65

  Fly   296 GLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGK 360
            .::|::::|..:.|...         .:|:.|.|..:....::||.|...||.|.:|..|.|||:
Zfish    66 AMNGRKIMGKEVKVNWA---------TSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGR 121

  Fly   361 IDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTER-------LDMN 418
            |...:::.|..||:||||||:::.|..||:.|::|:.|..|.||.::....|.:       .:.|
Zfish   122 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETN 186

  Fly   419 TTSLDTDEMDRT-----------GIDLGATGRL---------QLM--------------FKLAEG 449
            |..|..||:...           |:..|.|.:|         |:|              |...|.
Zfish   187 TKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFNSHES 251

  Fly   450 AGLAVPQAAANAL----------LATAPQPAPLQQQEV 477
            |..|:......:|          ..|....:|:||.:|
Zfish   252 AAHAIVSVNGTSLEGHIVKCYWGKETTDMVSPMQQVQV 289

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	SF-CC1	213..578	CDD:273721	70/298 (23%)
tia1	NP_997793.1	RRM1_TIA1	9..82	CDD:410027	15/74 (20%)
		RRM2_TIA1	94..171	CDD:410030	30/76 (39%)
		RRM3_TIA1	204..275	CDD:410032	11/70 (16%)