DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and SRSF4

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_005617.2 Gene:SRSF4 / 6429 HGNCID:10786 Length:494 Species:Homo sapiens


Alignment Length:244 Identity:72/244 - (29%)
Similarity:110/244 - (45%) Gaps:41/244 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 GGRKRSGSSPGGGGGHDDDYAENGPRNGSGGGSSHKKQSK-RSRSRSGSRDGKSRRDRGNERSSH 91
            |.|:|...|...........:.:..::.|..|||....|| |||||||||.....|.|...||..
Human   178 GSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRS 242

  Fly    92 R-------DKDKERDRNRDGG-------DRDRHRREGGDR---------DRERERERERDRSRRS 133
            :       .|:|.|.|:...|       |:...:.:..|.         .|.:.:.:.|.||:..
Human   243 KKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQER 307

  Fly   134 RSRDERGGG---GRYGDRD-KDRRSRDR-RGGSKSLQVDR--SRDKRR-RSRSRDQQRKRLSPIR 190
            |..:|:.|.   ||..::. :..|||.| :|||:|....|  |:|||: |.|||::.|.     |
Human   308 RVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRS-----R 367

  Fly   191 ERKRSHS-RSRDRNSRR---RGTNSPRRRSPPNGADRTTPTELSPEERD 235
            .|.||.| |||.|.|:|   .|::..:::...:.:...:|:....:||:
Human   368 SRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKERE 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 3/23 (13%)
SRSF4NP_005617.2 RRM1_SRSF4 1..87 CDD:410007
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 72..95
RRM2_SRSF4_like 104..175 CDD:410012
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 169..494 72/244 (30%)
Blue background indicates that the domain is not in the aligned region.

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