Protein Alignment Caper and hnrnpd

DIOPT Version :10

• Sequence 1: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: NP_001103930.1
• Gene: hnrnpd / 560522
• ZFINID: ZDB-GENE-070424-97
• Length: 314
• Species: Danio rerio
• Alignment Length: 169
• Identity: 44/169 - (26%)
• Similarity: 85/169 - (50%)
• Gaps: 13/169 - (7%)

  Fly   228 ELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVA 292
            :.|..|.|...:|...||.....:||:::|:..|:|.|..|.....|.|.:|..::.|.:.|||.
Zfish    45 DASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVE 109

  Fly   293 LALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEP 357
            ..:.....:|.|..|..:..:|.|.:        :|..     :::||.|..:..|:.:|..|:.
Zfish   110 KVITQKEHKLNGKVIDPKKAKAMKTK--------EPVK-----KIFVGGLSPDTPEEKIREYFDA 161

  Fly   358 FGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQL 396
            :|::::|:|.|:.:|.:.:|:.|||:...:..||.:|::
Zfish   162 YGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEKM 200

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	SF-CC1	213..578	CDD:273721	44/169 (26%)
hnrnpd	NP_001103930.1	CBFNT	3..54	CDD:311868	3/8 (38%)
		RRM_SF	50..129	CDD:473069	22/78 (28%)
		RRM2_hnRNPD	140..214	CDD:241027	18/61 (30%)