Protein Alignment Caper and lemd3

DIOPT Version :9

• Sequence 1: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: NP_001038329.1
• Gene: lemd3 / 558474
• ZFINID: ZDB-GENE-030131-490
• Length: 841
• Species: Danio rerio
• Alignment Length: 815
• Identity: 169/815 - (20%)
• Similarity: 259/815 - (31%)
• Gaps: 292/815 - (35%)

  Fly    12 EAPYMKNNVSAGSGGSGGRKRSG--SSPGGGGGHDDDYAENGP--------------------RN 54
            |.|.::     ||....||..||  ::.|.|...:...|...|                    :.
Zfish    43 EQPQLR-----GSRSGKGRSSSGTINNNGSGASSNSSSAARAPGFSARPPTSDVTRLSASRSEKR 102

  Fly    55 GSG----GGSSHKKQSKRSRSRSGSRDGKSRRDRGNER-------------------SSHR---- 92
            .:|    |.||.:...:..:.:.|...|.||||||:.:                   |:.|
Zfish   103 KAGKFVLGFSSDESDVEAPQKKGGPNHGGSRRDRGSAQQTPTIRPAGTPAAAVSLGLSADRKSVS 167

  Fly    93 ------DKDK-------ERDRN-----------------RDGGDRDRHRREGGDRDRERERERER 127
                  |:.|       |||..                 ||..|.|....|.|:|||.|||....
Zfish   168 GSPWWADRGKSGDLAETERDSRAVNGNKAFYESNSSKLARDYSDSDEEEEEVGERDRPRERRLTS 232

  Fly   128 DRS--------RRSRSRDERGGGGR---------YGD-RDKDRRSRDRRGGSKSLQVDRSRDKRR 174
            ..|        |.:.|.|:...|..         .|: ||:|.:......||   .|.||..|..
Zfish   233 RHSPPASSSPYRSAWSSDKTALGAHDTPDYNLDMVGERRDEDDKEPSEFSGS---YVSRSYPKLS 294

  Fly   175 RSRSRDQQRKRLSPIRERKRSH--------------------------SRSRDRNSRRRGTN-SP 212
            .:...|.......|.....|:|                          :..|..:|...|:| |.
Zfish   295 GTGRDDNSGGSSIPSGSFHRNHLDNGDGESACSSRFSIGLRPRFPSYTATYRANHSNHTGSNHSY 359

  Fly   213 RRRSPPNGADRTTPTE---LSPEERD-------------------ARTVFCIQL----------- 244
            ...|.......||..|   |...:|:                   |..:|.:.|
Zfish   360 SHASAHKSKQHTTVPEDELLQQFKREEVSSTGGFSAHYLSMFLLTAACLFFVLLGLMYLRMRGSG 424

  Fly   245 -------------------SQRVRARD--------LEEFFSSVGKVRD-----------VRLITC 271
                               ...|:.|:        |.|..:||....|           |.....
Zfish   425 TAVGDAVIMQHPFGAEFDKQYDVKERELILNLLLSLHEHLASVAGEHDCGDFKNPLNRSVSFSDA 489

  Fly   272 NKTKRFKGIAYIEFDDP--ESVALALGLSGQRLLG----VPIMVQHTQAEKNRLQNAAP------ 324
            :|..:.:..||....:.  |.|.....:.|.||:|    .||   ...:|.:||::..|
Zfish   490 SKYLKLQNEAYENLIETSLEWVMKTKDVVGIRLIGGDPDHPI---EDVSEISRLESIHPRMSFFC 551

  Fly   325 AFQPKSHTGPMR---------LYVGSLHF-----NITEDMLRGIFEPFGKIDAIQLIMDTETGRS 375
            .|:....|...|         :.||.:::     ...|:..|.::      |.::.|:|.
Zfish   552 RFRRAFFTVIYRVLLILAGIGVVVGLVYYMKYRWRKEEEETRHMY------DMVERIIDV----- 605

  Fly   376 KGYGFITYHNADDAKKALEQLNGF-------------ELAGRLMKV-GNVTERLDMNTTSLDTDE 426
                 :..||  :|.:..:.|..:             :...|:.|| ......|..|.:.:.|::
Zfish   606 -----LRSHN--EACQENKDLQAYLPIPHVRDSLVQPQERKRMKKVWDRAVSFLSANESRIRTEK 663

  Fly   427 MDRTGIDLGATGRLQ----------LMFKLAEGAGLAVPQAAANALLATAPQPAPLQQQEVAPSI 481
            ....|.|......||          :..|:.:|                  |..||.::...|:.
Zfish   664 QRIGGADFMVWRWLQPSMSPDKMCNMPSKVWQG------------------QAFPLDRRNSPPNS 710

  Fly   482 ATQCFILSNMFDPRTETNPTWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVL 546
            .|.|..:.|||||..|....|.:.|::.:||:|:.:.|::||.||..|..|.|||||.|...:..
Zfish   711 LTPCLKIRNMFDPVMEVGENWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLSAEHSGK 775

  Fly   547 AVNALHGRWFAGRVITAAYVPVINYHTMFPDSINA 581
            |..||||.||.|:::|..|:.:..||..||.::.:
Zfish   776 AFKALHGSWFDGKLVTVKYLRLDRYHQRFPQALGS 810

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	RRM1_RBM39_like	238..310	CDD:240729	21/126 (17%)
		RRM2_RBM23_RBM39	337..409	CDD:240730	14/90 (16%)
		RBM39linker	425..500	CDD:292157	18/84 (21%)
		RRM3_RBM39_like	483..567	CDD:240731	36/83 (43%)
lemd3	NP_001038329.1	LEM_Man1	2..45	CDD:240589	1/1 (100%)
		MSC	<462..676	CDD:286487	42/234 (18%)
		RRM_Man1	714..805	CDD:240732	37/90 (41%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0147
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.900