DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and RBM23

DIOPT Version :9

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:XP_024305408.1 Gene:RBM23 / 55147 HGNCID:20155 Length:515 Species:Homo sapiens


Alignment Length:568 Identity:241/568 - (42%)
Similarity:299/568 - (52%) Gaps:173/568 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AEDFD--VEAMLEAPYMK---------------NNVSAGSGGSGGRKRSGSSPGGGGGHDDDYAE 49
            ::|||  :||||||||.|               :|.::.:..||                     
Human    47 SDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSG--------------------- 90

  Fly    50 NGPRNGSGGGSSHKKQSKRSRSRSGSRDGKSRRDRGNERSSHRDKDKERDRNRDGGDRDRHRREG 114
                |.:.|.|:..:.||:.||||.::                                      
Human    91 ----NETSGSSTIGETSKKKRSRSHNK-------------------------------------- 113

  Fly   115 GDRDRERERERERDRSRRSRSRDERGGGGRYGDRDKDRRSR--DRRGGSKSLQVDRSRDKRRRSR 177
             .|||:|.|.|:|||.||..||....|      |....|||  |||.||:|    ||||.||   
Human   114 -SRDRKRSRSRDRDRYRRRNSRSRSPG------RQCRHRSRSWDRRHGSES----RSRDHRR--- 164

  Fly   178 SRDQQRKRLSPIRERKR-SHSRSRDRNSRRRGTNSP--RRRSPPNGADRTTPTELSPEERDARTV 239
             .|:...|..|:....| .||:            ||  |.:||.    |.....|||||||||||
Human   165 -EDRVHYRSPPLATGYRYGHSK------------SPHFREKSPV----REPVDNLSPEERDARTV 212

  Fly   240 FCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLG 304
            ||:||:.|:|.||||:|||:||||||||:|:...::|.|||||:||.:.:||.||:||:||||||
Human   213 FCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLG 277

  Fly   305 VPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMD 369
            |||:||.:|||||||...|...| |.:.||||||||||||||||||||||||||||||.|.|:.|
Human   278 VPIIVQASQAEKNRLAAMANNLQ-KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD 341

  Fly   370 TETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNT--TSLDTDEMDRTGI 432
            ::|||||||||||:.:::.|::|||||||||||||.|:||:||||||..|  |..|.|:    .:
Human   342 SDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQ----EL 402

  Fly   433 DLG-ATGRLQLMFKLAEGAGLAVPQAAANALLATAPQPAPLQQQEVAP----------------- 479
            ||| |.||.|||.|||||||:.:|..|| |..|.|.|.|.||.....|                 
Human   403 DLGSAGGRFQLMAKLAEGAGIQLPSTAA-AAAAAAAQAAALQLNGAVPLGALNPAALTGSLGHGK 466

  Fly   480 -------------------------------SIATQCFILSNMFDPRT 496
                                           ::|:|||.||::|.|:|
Human   467 GREGLGVWKEGVRGACSLTLPVFVLALSPALNLASQCFQLSSLFTPQT 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 RRM1_RBM39_like 238..310 CDD:240729 47/71 (66%)
RRM2_RBM23_RBM39 337..409 CDD:240730 55/71 (77%)
RBM39linker 425..500 CDD:292157 37/121 (31%)
RRM3_RBM39_like 483..567 CDD:240731 8/14 (57%)
RBM23XP_024305408.1 RRM 143..514 CDD:330708 201/400 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 122 1.000 Domainoid score I5648
eggNOG 1 0.900 - - E1_KOG0147
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG51929
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002599
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101917
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1252
SonicParanoid 1 1.000 - - X1707
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
109.710

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