Protein Alignment Caper and rbm39

DIOPT Version :9

• Sequence 1: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: XP_012827237.1
• Gene: rbm39 / 549542
• XenbaseID: XB-GENE-492226
• Length: 547
• Species: Xenopus tropicalis
• Alignment Length: 639
• Identity: 308/639 - (48%)
• Similarity: 388/639 - (60%)
• Gaps: 141/639 - (22%)

  Fly     1 MAEDFDVEAMLEAPYMK--NNVSAGSGGSGGRKRSGSSPGGGGGHDDDYAENGPRNGSGGGSSHK 63
            ||:|.|:||||||||.|  |.:|:.:                 ||::                ..
 Frog     1 MADDIDIEAMLEAPYQKDENKLSSAN-----------------GHEE----------------RS 32

  Fly    64 KQSKRSRSRSGSRDGKSRRDRGNERSSHRDKDKERDRNRDGGDRDRHRREGGDRDRERERERERD 128
            |:.|:|:|||.||:.|  |.|..||.  |.||:||.|::             .|:::|.|.|||
 Frog    33 KKRKKSKSRSRSREKK--RSRSKERK--RSKDRERKRSK-------------SREKKRSRSRER- 79

  Fly   129 RSRRSRSRDERGGGGRY-----GDRDKDRRSRDRRGGSKSLQVDRSRDKRRRSRSRDQQRKRLSP 188
            |..||||| ||...|||     |.:......|.:.||     :......||||:|:..|::..||
 Frog    80 RKSRSRSR-ERRFRGRYRSPYSGPKFGGGSMRGKMGG-----IPHGVKLRRRSKSKSPQKREKSP 138

  Fly   189 IRERKRSHSRSRDRNSRRRGTNSPRRRSPPNGADRTTPTELSPEERDARTVFCIQLSQRVRARDL 253
            :                    :|.:.|.|.:        .|||||||||||||:||:.|:|.|||
 Frog   139 V--------------------SSLQSRGPID--------NLSPEERDARTVFCMQLAARIRPRDL 175

  Fly   254 EEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNR 318
            |||||:||||||||:|:...::|.|||||:||.|..||.||:||:||::|||||:||.:||||||
 Frog   176 EEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDQSSVPLAIGLTGQKVLGVPIIVQASQAEKNR 240

  Fly   319 LQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITY 383
            ....|...| |...|||||||||||||||||||||||||||:|::|||:||:||||||||||||:
 Frog   241 AAAMANNLQ-KGTAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 304

  Fly   384 HNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNTTS--LDTDEMDRTGIDLGATGRLQLMFKL 446
            .:::.||||||||||||||||.||||:||||.|.:..|  ||:||::|||||||.|||||||.:|
 Frog   305 SDSECAKKALEQLNGFELAGRPMKVGHVTERTDASNASSFLDSDELERTGIDLGTTGRLQLMARL 369

  Fly   447 AEGAGLAVPQAAANAL----------------------------------------LATAPQPAP 471
            |||.||.:|.||..||                                        .:|.|.||.
 Frog   370 AEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRISQQSEALAAAAASAATISLAAASSTLPIPAT 434

  Fly   472 LQQQEVAPSIATQCFILSNMFDPRTETNPTWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYV 536
            .|      .||||||.|||||:|:||....||.||::||:|||.|||||:||:||..|..|.|||
 Frog   435 TQ------PIATQCFQLSNMFNPQTEDELGWDSEIKEDVIEECNKHGGVVHIYVDKNSPQGNVYV 493

  Fly   537 KCPSTTTAVLAVNALHGRWFAGRVITAAYVPVINYHTMFPDSINAVDLVTSTRK 590
            |||:..:|:.||||||||||||::|||||||:..||::||||:.:..|:..:|:
 Frog   494 KCPTIASAIAAVNALHGRWFAGKMITAAYVPLPTYHSLFPDSMTSTQLLFPSRR 547

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	RRM1_RBM39_like	238..310	CDD:240729	47/71 (66%)
		RRM2_RBM23_RBM39	337..409	CDD:240730	59/71 (83%)
		RBM39linker	425..500	CDD:292157	46/114 (40%)
		RRM3_RBM39_like	483..567	CDD:240731	56/83 (67%)
rbm39	XP_012827237.1	SF-CC1	97..535	CDD:273721	251/477 (53%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	122	1.000	Domainoid score	I5585
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	1	1.000	-	-		H134094
Inparanoid	1	1.050	494	1.000	Inparanoid score	I1364
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0002599
OrthoInspector	1	1.000	-	-		oto103810
Panther	1	1.100	-	-	LDO	PTHR23139
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X1707
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	8	8.150