DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and hnrnpa1

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:XP_012812298.1 Gene:hnrnpa1 / 496507 XenbaseID:XB-GENE-493963 Length:362 Species:Xenopus tropicalis


Alignment Length:169 Identity:41/169 - (24%)
Similarity:75/169 - (44%) Gaps:7/169 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 TELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESV 291
            :|...|....|.:|...||.......|.|.|...|.:.|..::....:||.:|..::.:...:.|
 Frog     4 SEAPKEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSTDEV 68

  Fly   292 ALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFE 356
            ..|:...       |..|.....|..|..:...:.:|.:|....:::||.:..:..|..||..||
 Frog    69 DAAMSAR-------PHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEHHLREYFE 126

  Fly   357 PFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 395
            .:|||:.|:::.|..:|:.:|:.|:|:.:.|...|.:.|
 Frog   127 QYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQ 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 41/169 (24%)
hnrnpa1XP_012812298.1 RRM1_hnRNPA1 12..92 CDD:410154 18/86 (21%)
RRM_SF 105..184 CDD:473069 19/61 (31%)
HnRNPA1 <315..>334 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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