Protein Alignment Caper and poldip3

DIOPT Version :10

• Sequence 1: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: XP_012816254.2
• Gene: poldip3 / 448024
• XenbaseID: XB-GENE-952215
• Length: 433
• Species: Xenopus tropicalis
• Alignment Length: 410
• Identity: 85/410 - (20%)
• Similarity: 151/410 - (36%)
• Gaps: 89/410 - (21%)

  Fly    53 RNGSGGGSSHKKQSKRSRSRSGSRDGKSRRDRGNERSSHRDKDKERDRNRDGGDRDRHRREGGDR 117
            :.|||.|     ...|..||:|:  |.:.|.|.....|.|.......|..|.      |::.|..
 Frog    12 KRGSGSG-----MYSRINSRAGT--GNNMRSRLQLPVSSRPVATSFQRTFDA------RQKIGVT 63

  Fly   118 DRERERERERDRSRRSRSRDERGG-GGRYGDRDKDRRSRDRRG--GSKSLQVDRSRDKRRRSRSR 179
            | .|.:...:|...:..::|.|.. .|:..|..:...||.:.|  |....:|..:|:|  .|..|
 Frog    64 D-ARMKLGVKDAREKLVAKDARFRITGKVQDAREMLNSRKQHGSVGENPAKVMDAREK--LSLKR 125

  Fly   180 DQQRKRLSP----------------IRERKRSHSRSRD--RNSRRRGTNSPRRRSPPNGADRTTP 226
            ......:||                |.:::.|:|....  :..|....|:...:.......|..|
 Frog   126 SAPSVAVSPTLTSGSSTINLTKTIQIPQQRGSNSNLAQSMKGMRINVVNNKPTKQEHISLSRQLP 190

  Fly   227 TELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAY---IEFDDP 288
            :.|..|:.:...   ::||. :.|:.::              ||...|.:.:.:.:   ::.|..
 Frog   191 SRLEEEDEEDDE---LELSS-IPAKQMK--------------ITATNTLQKRALPFTKVVQNDTY 237

  Fly   289 ESVALALGLSGQRLLGVPIMVQHTQAEKNR----------LQNAA--PAFQPKSHTGPMRLYVGS 341
            .:.|:....|    ...|::...|....:|          ||.|:  |.|.|...|   ::.|.:
 Frog   238 TAPAVTQAAS----TAAPLLRTKTLTNMSRTLVTKEDNTPLQVASKEPVFSPLEGT---KMTVNN 295

  Fly   342 LHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLM 406
            ||..:||:.:..:|...|.:...:|:       |.|...:.:...|||..|.::.|...|.|:.|
 Frog   296 LHPRVTEEDIVELFCVCGALKRARLL-------SPGAAEVVFVRKDDAVGAYKKYNNRYLDGQPM 353

  Fly   407 KVGNVTERLDMNTTSLDTDE 426
            |.     .|.:|.:.:.:|:
 Frog   354 KC-----NLHLNGSVITSDQ 368

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	SF-CC1	213..578	CDD:273721	45/229 (20%)
poldip3	XP_012816254.2	RRM_SKAR	289..357	CDD:410082	20/82 (24%)