DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and trv

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_001163754.3 Gene:trv / 43362 FlyBaseID:FBgn0085391 Length:651 Species:Drosophila melanogaster


Alignment Length:394 Identity:82/394 - (20%)
Similarity:131/394 - (33%) Gaps:137/394 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 TNS----PRRRS---PPNGADRTTPTELSPEERDART-----------VFCIQLSQRVRARDLEE 255
            |||    |...|   ||..|.||.......|:.|...           :|...||..:..:.|.|
  Fly   266 TNSFATPPAPHSLPLPPPHAARTEGGGQDMEDSDEEMEYMPPLHKQFHIFVGDLSSEIETQQLRE 330

  Fly   256 FFSSVGKVRDVRLITCNKTKRFKGIAYIEF---DDPESVALALG--LSGQRLLGVPIMVQHTQAE 315
            .|:..|::.|.|::...:|.:.||..::.|   .:.||...|:.  ..|.|.:......:...|.
  Fly   331 AFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPAS 395

  Fly   316 KNRLQNAAP-AFQP---KSHTGPMRLYVGSLHFNIT---EDMLRGIFEPFGKIDAIQLIMDTETG 373
            |   :|..| .|..   :|......:|||.::..:|   |::|:..|.|:|.|..|::..|    
  Fly   396 K---ENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVFKD---- 453

  Fly   374 RSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNTT-SLDTDEMDRT------- 430
              |||.|:.:...:.|..|:..::..|:..:.:|.....|..|.|.. ::.|..::..       
  Fly   454 --KGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGKESGDPNNAQTIATQALNSAAAAAAGF 516

  Fly   431 -------------GIDLGATG---------------------------RLQLMF----------- 444
                         |..|.|||                           .:|..|           
  Fly   517 PYGVGAAAAAAAYGQQLAATGCWYSPTPTYPASSATAAAVTPAAASAAAVQNQFLQGIQGYHFGQ 581

  Fly   445 -------------------------------KLAEG-AGLAVPQAAANALLATAPQPAPLQQQEV 477
                                           :||.| ||.|:||||.....       |:||.:|
  Fly   582 YGGYQQGYMGMGVQIPATWQGVTQAQISPAQQLATGVAGTAIPQAAGVVAY-------PIQQFQV 639

  Fly   478 APSI 481
            :|.:
  Fly   640 SPQV 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 78/386 (20%)
trvNP_001163754.3 RRM2_TIA1_like 313..387 CDD:409789 18/73 (25%)
RRM3_TIA1_like 416..489 CDD:409790 20/78 (26%)

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