DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and CstF64

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster


Alignment Length:191 Identity:52/191 - (27%)
Similarity:85/191 - (44%) Gaps:31/191 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   337 LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFEL 401
            ::||::.:..||:.|:.||...|.:.:::|:.|.|:|:.||:||..|.:.:.|..|:..|||:|:
  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82

  Fly   402 AGRLMKVGNV-TERLDMNTTSL-----------------DTDEM-DRTGIDLGATGRLQLMFKLA 447
            .||.::|.|. ||:..|....|                 |..|: .:|...|..    :.|::|.
  Fly    83 GGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPEDAPELITKTVASLPP----EQMYELM 143

  Fly   448 EGAGLAV---PQAA-----ANALLATAPQPAPLQQQEVAPSIATQCFILSNMFDPRTETNP 500
            :...|.:   |..|     .|..||.|...|.:..:.|.|..|......:|...|....||
  Fly   144 KQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKANQMPPVLGGNP 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 52/191 (27%)
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 27/75 (36%)
CSTF2_hinge 111..190 CDD:433869 17/82 (21%)
CSTF_C 377..416 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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