Protein Alignment Caper and sqd

DIOPT Version :10

• Sequence 1: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Alignment Length: 188
• Identity: 41/188 - (21%)
• Similarity: 81/188 - (43%)
• Gaps: 25/188 - (13%)

  Fly   230 SPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALA 294
            |.:..|.|.:|...||.....::|.:.|...|::..:.:.|..:|.|.:|.|:|.|.:.|:
  Fly    49 SGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEA---- 109

  Fly   295 LGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFG 359
                          :....|....:.|:......|:.....:::||.|...|:::.::..|..||
  Fly   110 --------------IDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFG 160

  Fly   360 KIDAIQLIMDTETGRSKGYGFITYHN---ADDAKKALEQLNGFELAGRLMKVGNVTER 414
            .|..:::..|.:..:.||:.|||:.:   ..|..|..:|    ::||:.:.|...|.:
  Fly   161 NIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQ----KIAGKEVDVKRATPK 214

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	SF-CC1	213..578	CDD:273721	41/188 (22%)
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	16/88 (18%)
		RRM2_hnRNPD_like	137..211	CDD:240775	20/77 (26%)