Protein Alignment Caper and hnrnpabb

DIOPT Version :10

• Sequence 1: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: NP_998467.1
• Gene: hnrnpabb / 406594
• ZFINID: ZDB-GENE-040426-2516
• Length: 309
• Species: Danio rerio
• Alignment Length: 177
• Identity: 54/177 - (30%)
• Similarity: 84/177 - (47%)
• Gaps: 14/177 - (7%)

  Fly   219 NGADRTTPTELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYI 283
            |||......:.|..|.||..:|...||.....:||:::||..|:|.|..:...:.|.|.:|..:|
Zfish    27 NGAGEGLQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFI 91

  Fly   284 EFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITE 348
            .|.:.:||...|.....||.|..|..:...|.|.         :|..     :::||.|:...||
Zfish    92 LFKESDSVDRVLQQKEHRLDGRQIDPKRAMAIKK---------EPVK-----KIFVGGLNPETTE 142

  Fly   349 DMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 395
            :.:|..|..||:|:.|:|..|.:|.:.:|:.|||:......||.||:
Zfish   143 EKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	SF-CC1	213..578	CDD:273721	54/177 (31%)
hnrnpabb	NP_998467.1	CBFNT	2..45	CDD:311868	6/17 (35%)
		RRM1_hnRNPAB	41..120	CDD:410151	25/78 (32%)
		RRM_SF	125..204	CDD:473069	23/79 (29%)