Protein Alignment Caper and rbm39a

DIOPT Version :9

• Sequence 1: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: NP_001012304.1
• Gene: rbm39a / 406251
• ZFINID: ZDB-GENE-040426-2852
• Length: 523
• Species: Danio rerio
• Alignment Length: 624
• Identity: 313/624 - (50%)
• Similarity: 383/624 - (61%)
• Gaps: 135/624 - (21%)

  Fly     1 MAEDFDVEAMLEAPYMKNNVSAGSGGSGGRKRSGSSPGGGGGHDDDYAENGPRNGSGGGSSHKKQ 65
            ||:|.|:||||||||.|::           .:|.|:    .||::                ..|:
Zfish     1 MADDLDIEAMLEAPYKKDD-----------NKSLST----NGHEE----------------RSKK 34

  Fly    66 SKRSRSRSGSRDGKSRRDRGNERSSHRDKDKERDRNRDGGDRDRHRREGGDRDRERERERERDRS 130
            .|||:|||.|||.|            |.|.:||.::.|       ||....|||:|.|.:||.||
Zfish    35 KKRSKSRSRSRDRK------------RSKSRERKKSHD-------RRRSRSRDRKRSRSKERRRS 80

  Fly   131 RRSRSRDERGGGGRY-----------GDRDKDRRSRDRRGGSKSLQVDRSRDKRRRSRSRDQQRK 184
             |||||:.   ||||           |.|.|       .|...::::     .|||||||...:|
Zfish    81 -RSRSRER---GGRYRAPFSGLKFNGGPRGK-------TGPPPAIKL-----SRRRSRSRSPFKK 129

  Fly   185 RLSPIRERKRSHSRSRDRNSRRRGTNSPRRRSPPNGADRTTPTE-LSPEERDARTVFCIQLSQRV 248
            ..||:|:                                  |.: |:|||||||||||:||:.|:
Zfish   130 DRSPVRQ----------------------------------PIDNLTPEERDARTVFCMQLAARI 160

  Fly   249 RARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQ 313
            |.||||||||:||||||||:|:...::|.||||||||.|..||.||:||||||||||||:||.:|
Zfish   161 RPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQ 225

  Fly   314 AEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGY 378
            |||||....|...| |...|||||||||||||||||||||||||||:||:|||:||:||||||||
Zfish   226 AEKNRAAALANNLQ-KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGY 289

  Fly   379 GFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNTTS--LDTDEMDRTGIDLGATGRLQ 441
            ||||:.:|:.||||||||||||||||.||||:||||.|.:|.|  ||.||::|||||||.|||||
Zfish   290 GFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQ 354

  Fly   442 LMFKLAEGAGLAVPQAAANAL----------LATAPQ--------PAPLQQQEVAPS--IATQCF 486
            ||.:||||.||.:|.||..||          .|||..        ..|..|....||  |||.||
Zfish   355 LMARLAEGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNINVPTNQALNLPSQPIATHCF 419

  Fly   487 ILSNMFDPRTETNPTWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNAL 551
            .|||||:|.:|.:..|::||:|||:|||.|||||:||:||..|..|.||||||:...|:.||:||
Zfish   420 QLSNMFNPNSENDHGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAAVSAL 484

  Fly   552 HGRWFAGRVITAAYVPVINYHTMFPDSINAVDLVTSTRK 590
            |||||.|::|||||||:..||.:||:|:.|..|:..:|:
Zfish   485 HGRWFGGKMITAAYVPLPTYHNLFPESVQATQLLIPSRR 523

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	RRM1_RBM39_like	238..310	CDD:240729	51/71 (72%)
		RRM2_RBM23_RBM39	337..409	CDD:240730	61/71 (86%)
		RBM39linker	425..500	CDD:292157	46/94 (49%)
		RRM3_RBM39_like	483..567	CDD:240731	52/83 (63%)
rbm39a	NP_001012304.1	SF-CC1	91..511	CDD:273721	257/466 (55%)
		RRM1_RBM39	148..232	CDD:240980	61/83 (73%)
		RRM2_RBM23_RBM39	248..320	CDD:240730	61/71 (86%)
		RBM39linker	337..432	CDD:292157	46/94 (49%)
		RRM3_RBM39_like	416..500	CDD:240731	52/83 (63%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	125	1.000	Domainoid score	I5410
eggNOG	1	0.900	-	-		E1_KOG0147
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H134094
Inparanoid	1	1.050	510	1.000	Inparanoid score	I1281
OMA	1	1.010	-	-		QHG51929
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0002599
OrthoInspector	1	1.000	-	-		otm24594
orthoMCL	1	0.900	-	-		OOG6_101917
Panther	1	1.100	-	-	LDO	PTHR23139
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1252
SonicParanoid	1	1.000	-	-		X1707
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	15	14.860