DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and Ref2

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_609574.1 Gene:Ref2 / 34667 FlyBaseID:FBgn0032439 Length:220 Species:Drosophila melanogaster


Alignment Length:109 Identity:25/109 - (22%)
Similarity:52/109 - (47%) Gaps:9/109 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   328 PKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKA 392
            ||.   |..:.|.:|.:.:.:|.:..:|...|.::...:..|.: |.|.|...:::...::|.:.
  Fly    71 PKK---PTLVMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRD-GNSLGTAHLSFKYREEAFQI 131

  Fly   393 LEQLNGFELAGRLMKVGNVTERLDMNTTSLDTDEMDRTGIDLGA 436
            :||.:|..|.||.:|:     .|..||.:....::|...:.:|:
  Fly   132 IEQFHGVRLDGRRLKL-----HLVQNTRNFKRTDVDDLSLRMGS 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 25/109 (23%)
Ref2NP_609574.1 RRM_SF 75..149 CDD:473069 17/79 (22%)

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