DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Caper and Secp43

DIOPT Version :9

Sequence 1:	NP_609095.1	Gene:	Caper / 33989	FlyBaseID:	FBgn0031883	Length:	594	Species:	Drosophila melanogaster
Sequence 2:	NP_608837.2	Gene:	Secp43 / 33652	FlyBaseID:	FBgn0031607	Length:	336	Species:	Drosophila melanogaster

Alignment Length:	153	Identity:	40/153 - (26%)
Similarity:	75/153 - (49%)	Gaps:	12/153 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly   266 VRLITCNKTKRFKGIAYIEF-DDPESVALALGLSGQRLLGV-PIMVQHTQAEKNRLQNAAPAFQP 328
            |||:....|....|..::.| .|..::.....|:|:.:.|. ||:       :.||.:|:.:::.
  Fly    36 VRLMRNKYTGEPAGYCFVNFISDDHALDAMHKLNGKPIPGTNPIV-------RFRLNSASNSYKL 93

  Fly   329 KSHTGPMRLYVGSLHFNITEDMLRGIF-EPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKA 392
            ..:.....::||.|..::.:..|..:| ..|..|...::|:|: .|.||||||:.:...|:.|.|
  Fly    94 PGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDS-LGFSKGYGFVRFGIEDEQKSA 157

  Fly   393 LEQLNGF-ELAGRLMKVGNVTER 414
            |..:||: .|..:.:|:.|...:
  Fly   158 LYDMNGYIGLGTKPIKICNAVPK 180

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	RRM1_RBM39_like	238..310	CDD:240729	12/45 (27%)
		RRM2_RBM23_RBM39	337..409	CDD:240730	24/73 (33%)
		RBM39linker	425..500	CDD:292157
		RRM3_RBM39_like	483..567	CDD:240731
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:241054	15/60 (25%)
Secp43	NP_608837.2	RRM2_SECp43	99..180	CDD:241056	25/81 (31%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463919
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930