Protein Alignment Caper and U2af50

DIOPT Version :9

• Sequence 1: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: NP_001245708.1
• Gene: U2af50 / 32602
• FlyBaseID: FBgn0005411
• Length: 427
• Species: Drosophila melanogaster
• Alignment Length: 479
• Identity: 112/479 - (23%)
• Similarity: 179/479 - (37%)
• Gaps: 125/479 - (26%)

  Fly   151 DRRSRDRRGGSKSLQVDRSRDKRRRSRSRDQQRKRLSPIRERKRSHSRSRDRNSRRRGTNSPRRR 215
            |.:.|:|         ||.| :|.||||||         |.|:||..|...|||||:  .|....
  Fly    13 DNKDRER---------DRER-RRHRSRSRD---------RHRERSRDRRHHRNSRRK--PSLYWD 56

  Fly   216 SPPNGADRTTPTEL----------------SPE----------ERDARTVFCIQLSQRVRARDLE 254
            .||.|.:..||.:.                :|:          .|.||.::...:...|...::.
  Fly    57 VPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMM 121

  Fly   255 EFFS------SVGKVRDVRLITC--NKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQ- 310
            |||:      .:.:.....::.|  |..|.|   |::||...:....|:...|..|.|..:.::
  Fly   122 EFFNQQMHLVGLAQAAGSPVLACQINLDKNF---AFLEFRSIDETTQAMAFDGINLKGQSLKIRR 183

  Fly   311 -HTQAEKNRLQNAAPAFQPKSHT----------GPMRLYVGSLHFNITEDMLRGIFEPFGKIDAI 364
             |.......:.: .||.:|...:          .|.::::|.|...:.:|.::.:...|||:.|.
  Fly   184 PHDYQPMPGITD-TPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAF 247

  Fly   365 QLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLM-----KVGNVTERLDMNTTSLDT 424
            .|:.|..||.||||.|..|.:.....:::..|||.:|..:.:     .||....:...|||
  Fly   248 NLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTT---- 308

  Fly   425 DEMDRTGIDLGATGRLQLMFKLAEGAGLAVPQAAANALLATAPQPAPLQQQEVAPSIATQCFILS 489
                                   :...|.|| ..:|.:.:..|               |:...|.
  Fly   309 -----------------------QSVMLQVP-GLSNVVTSGPP---------------TEVLCLL 334

  Fly   490 NMFDPRTETNPTWDVEIRDDVLEECAKHGGVLHIHVD------TISHTGTVYVKCPSTTTAVLAV 548
            ||..|....:.....:|.:|:.|||.|:|.|..:.:.      .:...|.|:|:..|......|.
  Fly   335 NMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGVEVPGCGKVFVEFNSVLDCQKAQ 399

  Fly   549 NALHGRWFAGRVITAAYVPVINYH 572
            .||.||.|:.||:..:|.....||
  Fly   400 QALTGRKFSDRVVVTSYFDPDKYH 423

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	RRM1_RBM39_like	238..310	CDD:240729	15/79 (19%)
		RRM2_RBM23_RBM39	337..409	CDD:240730	21/76 (28%)
		RBM39linker	425..500	CDD:292157	10/74 (14%)
		RRM3_RBM39_like	483..567	CDD:240731	26/89 (29%)
U2af50	NP_001245708.1	RRM1_U2AF65	103..184	CDD:240676	17/83 (20%)
		RRM2_U2AF65	218..294	CDD:240677	21/75 (28%)
		RRM3_U2AF65	328..415	CDD:240678	25/86 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910