DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and tia1l

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_956476.1 Gene:tia1l / 323447 ZFINID:ZDB-GENE-030131-2167 Length:342 Species:Danio rerio


Alignment Length:184 Identity:56/184 - (30%)
Similarity:95/184 - (51%) Gaps:12/184 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   232 EERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALAL- 295
            :|...||::...||:.|....:.:.||.:|..:..::|.  .|.......::||.:....|.|| 
Zfish     4 DEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMIL--DTTGNDPYCFVEFYENRHAAAALA 66

  Fly   296 GLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGK 360
            .::|:::||..:.|...         :.|:.|.|..:....::||.|...|:.|.:|..|.||||
Zfish    67 AMNGRKILGKDMKVNWA---------STPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGK 122

  Fly   361 IDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTER 414
            |...:::.|..||:|||||||::.|..||:.|::|:||..|.||.::....|.:
Zfish   123 ISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRK 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 56/184 (30%)
tia1lNP_956476.1 RRM_SF 10..83 CDD:473069 18/74 (24%)
RRM2_TIA1_like 98..172 CDD:409789 32/73 (44%)
RRM3_TIAR 206..278 CDD:241064
Blue background indicates that the domain is not in the aligned region.

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