Protein Alignment Caper and srsf4

DIOPT Version :10

• Sequence 1: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: NP_955868.1
• Gene: srsf4 / 321872
• ZFINID: ZDB-GENE-030131-591
• Length: 366
• Species: Danio rerio
• Alignment Length: 285
• Identity: 74/285 - (25%)
• Similarity: 104/285 - (36%)
• Gaps: 92/285 - (32%)

  Fly    23 GSGGSGGRKRSGSSPGGGGGH----------------------------------DDDYAE-NGP 52
            |...||...|.|...|||||.                                  :..||: |..
Zfish    77 GGNRSGRSNRYGRGGGGGGGDRYGPPTRTDYRLIVENLSSRCSWQDLKDYMRQAGEVTYADTNKG 141

  Fly    53 RNGSG---------------------------------GGSSHKKQSKRSRSRSGSRDGKSRRDR 84
            |...|                                 .|:..::...||.|||.||..:|||.|
Zfish   142 RKNEGVIEFRQYSDMKRALEKLDGTEVNGRKIRLIEDRPGARRRRSYSRSASRSRSRSRRSRRSR 206

  Fly    85 GNERSSHRD-KDKERDRNRDGGDRDRHR-----------REGGDRDRERERERERDRSRRSRSRD 137
            .:.|:|.|. ....|.|:|....:.:.|           |:|||..|:....|. .::::|:..:
Zfish   207 SHSRTSSRSGASGSRSRSRSTSKKAKSRSSRMEESSNGARKGGDSGRDNSLSRS-PQNKKSKREN 270

  Fly   138 ERG-GGGRYGDRDKDRRSRD--RRGGSKSLQVDRSRDKRR----RSRSRDQQRKRLSP-IRERKR 194
            :|| ...|...|.|.|..||  |..||||.:..:|.|:.|    |||:..:.|.:..| ..:|:.
Zfish   271 KRGRSDSRSRSRSKSRNDRDLSRESGSKSQEASKSGDEGRAGTHRSRAHSRSRSQTPPNADQRRE 335

  Fly   195 SHSRSRDRNSRR---RGTNSPRRRS 216
            |.||||.|:..|   |..:..|.||
Zfish   336 SRSRSRSRSKSRSHSRSQSYSRSRS 360

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	SF-CC1	213..578	CDD:273721	3/4 (75%)
srsf4	NP_955868.1	RRM_SF	1..81	CDD:473069	1/3 (33%)
		RRM2_SRSF4	101..182	CDD:410157	5/80 (6%)