DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and Pabpn1l

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_001107251.1 Gene:Pabpn1l / 307920 RGDID:1562761 Length:269 Species:Rattus norvegicus


Alignment Length:193 Identity:44/193 - (22%)
Similarity:76/193 - (39%) Gaps:34/193 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   289 ESVALAL-GLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKS-------------HTGPMRLYV 339
            |::.|.| .:....:|..|..||....|:.|.: |.....|::             ......:||
  Rat    80 EAIRLKLWTMEHAEVLPEPPSVQRKATEEERAE-ARELLSPETIGCFFPGAPKENVEADHRSVYV 143

  Fly   340 GSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGR 404
            |::.:..:...|...|.|.|:|..:.::.|..:|..|||.:|.:.:....:.|: :|:.....||
  Rat   144 GNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAV-RLDESTFRGR 207

  Fly   405 LMKVGNVTERLDMNTTSLDTDEMDRTGIDLGAT-------GRLQLMFKL-----AEGAGLAVP 455
            ::||      |...|........||.|:...::       |.||...:|     :.|.|.|.|
  Rat   208 VIKV------LPKRTNFPGISSTDRGGLRTHSSSRAAFLQGSLQRKPRLRPHGQSRGRGRASP 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 44/193 (23%)
Pabpn1lNP_001107251.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 26..54
RRM_SF 140..216 CDD:473069 21/82 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 240..269 8/25 (32%)
Blue background indicates that the domain is not in the aligned region.

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