DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and rnp24

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_594970.1 Gene:rnp24 / 2542965 PomBaseID:SPAC3G6.04 Length:369 Species:Schizosaccharomyces pombe


Alignment Length:378 Identity:83/378 - (21%)
Similarity:152/378 - (40%) Gaps:83/378 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 GDRDKDRRSR--DRRGGSKSLQVDRSRD---------KRRRS---------------RSRDQQRK 184
            |..||.|:..  ::.|.::.|::|.::.         |.|::               .::.::.|
pombe    15 GQPDKKRKKHESEKEGENEVLEIDVTKPVPPSKKLMRKLRKAGKIDKDGNWTPEALEEAKKKEEK 79

  Fly   185 RLSPIRERKRSHSRSRDRNSRRRGTNSPRRRSPPNGADRTTPTELSPEERDARTVFCIQLSQRVR 249
            ||..:..:   :.|..:..|:.....||......|.:..||        ::..|.|.::.:..:.
pombe    80 RLKRLDAK---YGRKEEGESQEESKRSPWGIWVGNLSFHTT--------KEILTDFFVRETSEMI 133

  Fly   250 ARDLEEFFSSVGKVRDVRL-ITCNKTKRF--KGIAYIEFDDPESVALALGLSGQRLLGVPIMVQ- 310
            ....||....:...:..|: :..:|.|||  ||.||::|...:::.|||..|.:.|.|..|::: 
pombe   134 KEVSEENIKPITTEQITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRNILIKS 198

  Fly   311 ------HTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMD 369
                  ......|.|...|.....|.....: |:||:|.|..|:..|:..|...|:|..::|:..
pombe   199 NTDFSGRPSKPANTLSKTASIQSSKKEPSSI-LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTF 262

  Fly   370 TETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLDMNTTSLDTDEMDRTGIDL 434
            .:||:.||:||:.:.:.|...||:|             :|:.:.||:...   |..:..|....:
pombe   263 EDTGKCKGFGFVDFPDIDTCMKAME-------------LGHNSWRLEYGE---DRSKRMRNKSPM 311

  Fly   435 GATGRL----------QLMFKLAE---------GAGLAVPQAAANALLATAPQ 468
            ..:||.          :..||.|.         ||.||..|.::.|::..|.|
pombe   312 ARSGRFNDAESLGQEDKPNFKRARKIDPRSVRPGAALAKAQRSSAAIVEPAGQ 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 67/285 (24%)
rnp24NP_594970.1 RRM1_Nop13p_fungi 107..199 CDD:409830 24/99 (24%)
RRM2_Nop13p_fungi 230..299 CDD:409831 24/81 (30%)

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