Protein Alignment Caper and rsd1

DIOPT Version :9

• Sequence 1: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: NP_594422.2
• Gene: rsd1 / 2542545
• PomBaseID: SPAC19G12.07c
• Length: 603
• Species: Schizosaccharomyces pombe
• Alignment Length: 654
• Identity: 216/654 - (33%)
• Similarity: 296/654 - (45%)
• Gaps: 132/654 - (20%)

  Fly     6 DVEAMLEAPYMK--------NNVSAGSG-------GSGGRKRSGSSPGGGGGHDDDYAENGPRNG 55
            |.||:.|||:.|        |...|.|.       .|.....|...|.....||..:........
pombe     4 DAEALAEAPFRKQEVPQNQENQQKASSSFHESSLTSSTHSHPSNPPPPPTRLHDRSFKPVSKNYE 68

  Fly    56 SGG---------GSSHKKQSKRS--RSRSGSRDGKSRRDRGNERSSHRDKDKER---DRNRDGGD 106
            |.|         |..:.:.||:|  |..||..|     |.....||||.....|   ....|.|.
pombe    69 SEGRLTPPPVSMGYRYARSSKQSFQREDSGYND-----DVVTNSSSHRTPRHHRRSYSPRSDYGS 128

  Fly   107 R--------DRHRREGGDRDRERERERERDRSRRSRSRDERGGGGRYGDRDK-----DRRSRDRR 158
            |        |.|:.....|.|:|:|.....|||...||...    ||.|..:     .|.||.||
pombe   129 RSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRH----RYDDYSRSPPYSSRHSRSRR 189

  Fly   159 GGSKSLQVDRSRDKRRRSRSRDQQRKRLSPIRERKRSHSRSRDRNSRRRGTNSPRRRSPPNGADR 223
                       |.:.|.|||..........:|:..|||.|.|.|       :.||.||
pombe   190 -----------RYEERSSRSSRAHDYDYEDLRDDDRSHERKRSR-------SRPRERS------- 229

  Fly   224 TTPTELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDP 288
               ::||.||||.||||..||:.|:.:|:|.:||...|.|||.:::....:.|.||:||:||...
pombe   230 ---SKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHE 291

  Fly   289 ESVALALGLSGQRLLGVPIMVQHTQAEKNR-LQNAAPAFQPKSHTGPM-RLYVGSLHFNITEDML 351
            :||..|:.|||:||||:|::||.|:||||| .:.||...:..|...|. ||.|.::|||:|::.:
pombe   292 DSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDV 356

  Fly   352 RGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTERLD 416
            :.||||||.|:.:.|..| :..||||:|:|.|.|...|:.|||::|||:||||.|:|....::..
pombe   357 KAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFT 420

  Fly   417 MNTTSLDTDEMDRT--------------------------GIDLGAT-------GRLQLMFKLAE 448
            ..|||......|.|                          ...|..|       .|.:||.|||.
pombe   421 TETTSSMLKRFDETLARQERSQPSQRNGGSSTYESQDYREAAPLSPTEEESRPITRDELMKKLAR 485

  Fly   449 GAGLAVPQAAANALLATAPQPAPLQQQEVAPSIATQCFILSNMFDPRTETNPTWDVEIRDDVLEE 513
            ...:     :.|:.|.:.|:          |.|.::|.:|.|||:|..||:|.|..|:..||.||
pombe   486 SEDI-----SDNSKLVSEPE----------PPIRSRCALLENMFNPAEETSPNWVQELEQDVKEE 535

  Fly   514 C-AKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAVNALHGRWFAGRVITAAYVPVINYHTMFPD 577
            | .|:|.|:||.| ..:..|.::||..:...|..|:..||.|||.||.|.|:.:|..:|:..||:
pombe   536 CDEKYGKVVHIAV-VPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASILPETDYYFKFPN 599

  Fly   578 SINA 581
            :..|
pombe   600 AKTA 603

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	RRM1_RBM39_like	238..310	CDD:240729	32/71 (45%)
		RRM2_RBM23_RBM39	337..409	CDD:240730	35/71 (49%)
		RBM39linker	425..500	CDD:292157	23/107 (21%)
		RRM3_RBM39_like	483..567	CDD:240731	36/84 (43%)
rsd1	NP_594422.2	RRM1_RBM39_like	241..313	CDD:240729	32/71 (45%)
		RRM2_RBM23_RBM39	342..413	CDD:240730	35/71 (49%)
		RBM39linker	476..523	CDD:292157	19/61 (31%)
		RRM3_RBM39_like	505..589	CDD:240731	36/84 (43%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	75	1.000	Domainoid score	I2503
eggNOG	1	0.900	-	-		E1_KOG0147
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H134094
Inparanoid	1	1.050	261	1.000	Inparanoid score	I744
OMA	1	1.010	-	-		QHG51929
OrthoFinder	1	1.000	-	-		FOG0002599
OrthoInspector	1	1.000	-	-		oto101260
orthoMCL	1	0.900	-	-		OOG6_101917
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1252
SonicParanoid	1	1.000	-	-		X1707
TreeFam	1	0.960	-	-
	13	12.760