DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and CSTF2T

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_056050.1 Gene:CSTF2T / 23283 HGNCID:17086 Length:616 Species:Homo sapiens


Alignment Length:173 Identity:54/173 - (31%)
Similarity:79/173 - (45%) Gaps:30/173 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   337 LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFEL 401
            ::||::.:..||:.|:.||...|.:.:.:|:.|.|||:.|||||..|.:.:.|..|:..|||.|.
Human    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 82

  Fly   402 AGRLMKVGNVTERLDMNTTSLDT-------------DEMDRTGIDLGATGRL-----QLMFKLAE 448
            :||.::|.|...  :.|...|.:             |.:|........|..:     :.||:|.:
Human    83 SGRALRVDNAAS--EKNKEELKSLGPAAPIIDSPYGDPIDPEDAPESITRAVASLPPEQMFELMK 145

  Fly   449 GAGLAVP---QAAANALLATAPQ--PAPLQQQEVA----PSIA 482
            ...|.|.   |.|.|.||.. ||  .|.||.|.|.    |.||
Human   146 QMKLCVQNSHQEARNMLLQN-PQLAYALLQAQVVMRIMDPEIA 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 54/173 (31%)
CSTF2TNP_056050.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 29/75 (39%)
CSTF2_hinge 112..191 CDD:433869 23/77 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..241
PRK12323 <242..>387 CDD:481241
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 262..418
9 X 5 AA tandem repeats of M-E-T-R-[AG] 418..462
9 X 5 AA tandem repeats of G-[AT]-G-[MI]-Q 505..549
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 542..573
CSTF_C 572..612 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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