DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and Tia1

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_035715.1 Gene:Tia1 / 21841 MGIID:107914 Length:386 Species:Mus musculus


Alignment Length:206 Identity:53/206 - (25%)
Similarity:104/206 - (50%) Gaps:12/206 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   232 EERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALAL- 295
            |:...:|::...||:.|....:.:.||.:|..::.::|.  .|.......::||.:....|.|| 
Mouse     2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHAAAALA 64

  Fly   296 GLSGQRLLGVPIMVQ--HTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPF 358
            .::|::::|..:.|.  .|.:.:.:..:::.....:.......::||.|...||.:.::..|.||
Mouse    65 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPF 129

  Fly   359 GKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVTER-------LD 416
            |:|...:::.|..||:||||||:::.|..||:.|::|:.|..|.||.::....|.:       .:
Mouse   130 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 194

  Fly   417 MNTTSLDTDEM 427
            .||..|..||:
Mouse   195 SNTKQLSYDEV 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 53/206 (26%)
Tia1NP_035715.1 RRM1_TIA1 8..81 CDD:410027 17/74 (23%)
RRM2_TIA1 104..181 CDD:410030 28/76 (37%)
RRM3_TIAR 214..286 CDD:241064
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 355..376
Blue background indicates that the domain is not in the aligned region.

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