DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caper and Snrnp70

DIOPT Version :10

Sequence 1:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_033250.3 Gene:Snrnp70 / 20637 MGIID:98341 Length:448 Species:Mus musculus


Alignment Length:226 Identity:72/226 - (31%)
Similarity:90/226 - (39%) Gaps:45/226 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 GGSGGRKRSGSSPG-GGGGHDDDYAENGPRNGSGGGSSHKKQSKRSRSRSGSRDGKSR-RDRGNE 87
            ||.||.:|.|:... ...|.||.     .|.....|.|......|.|.|...|..:|| ||:..|
Mouse   194 GGLGGTRRGGADVNIRHSGRDDT-----SRYDERPGPSPLPHRDRDRDRERERRERSRERDKERE 253

  Fly    88 RSSHRDKD-KERDRNRDGGDRDRHRREGGDRDRERER--ERERDRSRRSRSRDER-------GGG 142
            |...|.:| :.|.|:||..:|.|.|....|:||:|:|  .|.|:|:||.|.|.|.       |||
Mouse   254 RRRSRSRDRRRRSRSRDKDERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGGGGG 318

  Fly   143 GRYGDRDKDRRSRDRRG------------------GSKSLQVDRSRDKRRRSRSRDQQRKRLSPI 189
            |..|....|.......|                  |.:....||.|::||..||.          
Mouse   319 GSGGGGGGDMAEPSEAGDGAPDDGPPGELGPEGPDGPEEKGRDRDRERRRSHRSE---------- 373

  Fly   190 RERKRSHSRSRDRNSRRRGTNSPRRRSPPNG 220
            |||:|...|.|||..:|....|.|.|....|
Mouse   374 RERRRDRDRDRDREHKRGERGSERGRDEARG 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 3/8 (38%)
Snrnp70NP_033250.3 U1snRNP70_N 3..94 CDD:432406
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..79
Required for interaction with U1 RNA. /evidence=ECO:0000250|UniProtKB:P08621 92..202 4/7 (57%)
RRM_snRNP70 102..187 CDD:409682
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 187..439 72/226 (32%)
Blue background indicates that the domain is not in the aligned region.

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