Protein Alignment Caper and hrpa-2

DIOPT Version :10

• Sequence 1: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: NP_741783.1
• Gene: hrpa-2 / 180791
• WormBaseID: WBGene00019249
• Length: 336
• Species: Caenorhabditis elegans
• Alignment Length: 198
• Identity: 46/198 - (23%)
• Similarity: 75/198 - (37%)
• Gaps: 22/198 - (11%)

  Fly   202 RNSRRRGTNSPRRRSPPNGADRTTPTELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDV 266
            |..::.|....:..|||                ..|.:|...||.......|..:||..|.|.|.
 Worm    51 RQFQQMGMGQYQHDSPP----------------QLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDA 99

  Fly   267 RLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHT-QAEKNRLQNAAPAFQPKS 330
            .:|....||..:|..::.|....|...|:.....:|.|..:..:.. ..|:.......|.|:...
 Worm   100 IVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPREQMSSMIPPPFFETDP 164

  Fly   331 HTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQ 395
            ..|...|..|..:...:.|.||..||.||.:|.::::     |:.:|.||:.|.:.:.|.:.|..
 Worm   165 APGCKLLLNGITNGVHSVDSLRVYFETFGTLDQVEIL-----GQPRGLGFVIYEDKESADRCLAH 224

  Fly   396 LNG 398
            .:|
 Worm   225 NSG 227

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Caper	NP_609095.1	SF-CC1	213..578	CDD:273721	44/187 (24%)
hrpa-2	NP_741783.1	RRM_SF	71..148	CDD:473069	18/76 (24%)
		PABP-1234	72..>244	CDD:130689	40/161 (25%)